Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1718 ATGAAACTTTCTTCAGCTGGTTTTAGTCCTCCACCACAGGAAGGAGAAAAACGAGTTCTAGATTCAGAACTCTGGCATGCATGTGCTGGTCCTCTTGTTTCTTTACCAGCTGTTGGAAGCCGCGTGGTCTATTTTCCACAAGGTCACAGTGAACAGGTTGCCGTGTCTACCAACAGAGAAGTGGATGGCCATATACCCAACTATCCAAGCTTACCCCCGCAGCTTATTTGTCAACTCCATAACGTGACTATGCATGCAGATACTGAGACAGATGAAGTGTATGCACAGATGACCTTGCAACCTCTGAGTCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTCCGAGTAAACAGCCAACAAACTACTTTTGCAAAATTTTGACAGCCAGTGATACTAGCACTCATGGGGGATTCTCTGTTCCTCGCAGGGCAGCTGAAAAAGTTTTCCCTCCATTGGACTTTTCACAACAGCCTCCCGCTCAAGAGTTAATTGCAAGAGATTTGCATGGTAATGAATGGAAATTCAGACATATATTCCGGGGCCAGCCTAAGAGGCATCTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGACGTGCTAATCGACCTCAACCTGTGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCACGCAGCTGCAACAAATAGTCGTTTCACCATCTTTTATAACCCACGTGCTAGCCCATCAGAATTTGTCATATCGTTGGCAAAGTATGTTAAAGCAGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCTAGTGTGCGGCGATACATGGGCACAATAACTGGCATTAGTGACTTAGATTCTGTTCGGTGGCCAAATTCCCATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACGGCAGGAGAGAGGCAACCTCGTGTGTCTTTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCGTTCCCCTTTAGGCTTAAAAGGCCATGGCCTCCAGGAATGCCTTCATTCCATGCAGGCTTGAAGGATGATGATTTTGGTATAAATTCTCCTCTATTGTGGCTTCGAGACCCAGACCGAGGGCTTCAGTCTCTTCCCTTTCAGGGCGTTGGTGTTAGTCCTTGGATGCAGCCAAGGCATCCCTCCATGGTGAATTTGCAAACCGATATGTACCAAGCTATGGCTGCTGCTGCACTTCAGGATATGAGAACTTTAGATCCTTCGAAGCAGCATGCTACTTCCTTACTTCAATTTCAGCAACCACAGAACTTCCCCAACAGGACTTCTGCTTTAATGCAGACCCAAATGTTGCAGCAGTCTCAACATCAGCAAGCTTTTCCAAATAGTCAAGAAAATCCACATCCATCCCAATCTCAGGCTCAAACTCACACACATTTTCAGCAGCATCTACAGCATCAGCACTCATTCAATAATCAGAATCAGCATCATCTTCTGCAGCAACAACAGCAGCCACAACCACAACAAGTGATAGATCACCAGCAGATTTCAAGTGCTGTCTCTACAATGTCTCAGTTTGTTTCAGCACCTCAATCTCAATCCCCACCCATGCAAGCTATCTCTTCATTGGGCCATCAACAAAGTTTTTCAGATTCAAATGGGAACCCTGCTACTACTGCTATTGTTTCTCCCTTGCATAGTATATTGAGTTCATTTCCCCAGGATGAACCATCTCACCTTCTCAACCTTCCTAGAACTAGCTCTTGGGTTCCTGTTCAACCTTCAGGTGCATGGCCCTCCAAGCGCATTGCCTTGGATCCTCTCCTCTCTTCTGGAGCATCTCAATGTGTTCTGCCTCAAGTGGAGCAGTTGGGGCAGCCACAGAGCACCATATCTCAAAATGCCATTACATTGCCACCCTTTCCTGGAAGGGAGTGTGCAATAGAAGGGAGCAATGATCCACAAAACCATCTTTTGTTTGGTGTTAATATAGAGCCATCGTCGCTTCTTGTGCATAATGGGATGTCTAGCCTTAAGGGAGTCAGCAGTAACAGTGACTCACCAACCATACCTTTTCAATCATCTAATTACCTAAACACCACAGGTACAGATTCTTCATTGAATCCTGGAATGACACCCAATATTGGTGAATTGGGCTTCCTGCCAACTCCTGATAACGGGGGCCAAGGAAACCCACCAACCAAAACCTTTGTTAAGGTTTATAAGTCAGGGTCCTTCGGGAGATCGTTAGATATCACTAAATTCACCAGCTACCATGAGCTACGCAGCGAGCTTGCTCGTATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTTGGCGATGGCCCTTGGCCGGAATTTGTAAATAGTGTATGGTGTATCAAGATACTTTCCCCACAGGAAGTGCAGCAAATGGGCCACAATGGCCTCGAGCTTCTGAACTCAGTTCCAATTCAGAGGCTCTCTGATGGCATTTGCGATGACTACACCGGCCGTGAGGACCCAAGAAATTTAAGCACTGGGGTAACAACTGTGGGGTCTTTAAACTACTGA 2706 0.4623 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVISLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPFRLKRPWPPGMPSFHAGLKDDDFGINSPLLWLRDPDRGLQSLPFQGVGVSPWMQPRHPSMVNLQTDMYQAMAAAALQDMRTLDPSKQHATSLLQFQQPQNFPNRTSALMQTQMLQQSQHQQAFPNSQENPHPSQSQAQTHTHFQQHLQHQHSFNNQNQHHLLQQQQQPQPQQVIDHQQISSAVSTMSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPATTAIVSPLHSILSSFPQDEPSHLLNLPRTSSWVPVQPSGAWPSKRIALDPLLSSGASQCVLPQVEQLGQPQSTISQNAITLPPFPGRECAIEGSNDPQNHLLFGVNIEPSSLLVHNGMSSLKGVSSNSDSPTIPFQSSNYLNTTGTDSSLNPGMTPNIGELGFLPTPDNGGQGNPPTKTFVKVYKSGSFGRSLDITKFTSYHELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGHNGLELLNSVPIQRLSDGICDDYTGREDPRNLSTGVTTVGSLNY* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1718 901 MobiDBLite consensus disorder prediction 481 548 - -
Apr2g1718 901 Gene3D - 291 363 - -
Apr2g1718 901 Gene3D - 125 228 IPR015300 -
Apr2g1718 901 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Apr2g1718 901 SMART B3_2 127 229 IPR003340 GO:0003677
Apr2g1718 901 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Apr2g1718 901 PANTHER AUXIN RESPONSE FACTOR 1 881 - -
Apr2g1718 901 Pfam AUX/IAA family 766 853 IPR033389 -
Apr2g1718 901 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 881 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr2g1718 901 Gene3D - 765 857 - -
Apr2g1718 901 SUPERFAMILY CAD & PB1 domains 764 843 - -
Apr2g1718 901 CDD B3_DNA 126 227 IPR003340 GO:0003677
Apr2g1718 901 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr2g1718 901 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Apr2g1718 901 ProSiteProfiles PB1 domain profile. 768 852 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1718 Apr-Chr2 22786052 22793170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1718 1 483 B3 DNA Binding Superfamily AT1G30330 84.458 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr2g1718 AUX_IAA 1.2e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1718 - - gmx:100777789 1587.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2211 10 34528368 34534911 Apr2g1718 2 22786052 22793170 PCT