Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1714 ATGGGGCGTCGAAAAATCGAGATTGCGATGGTGCAGGATGCGAACACAAGACAAGTCACGTTCTCGAAGCGTCGAACGGGTTTGTTCAAGAAAGCGAACGAGCTATCAATCCTGTGCGGCGCAGAAGTTGCTATTGTTGTGTTCTCTCCCGGGAACAAACCTTACTCGTTTGGGCACCCGGGAGTTGATGCTGTTGCGGCCCAGTATCTTCAAATTGAGCCCAAATCTAATGAGGCCCAAACCAAGGCCTCTTCTAAAAGGGCTAAAAATAAAAATAATATGGAGAAGTTGAATCGAGAACTTGCCCATTGGAAAGAGCAATTGCATGAGGAAGAAAAGATGGGGGATTTGCATGATGTGGCTATCAATCAAGCCATGGGAACCCAACGCTTTGAACTTCAACAGCGCTTTGCTTCACTTCAACGGCTACGATCGAGTGTGAGGGGTCGTATCGATGAGATTGAAGCAGCCGAATCTTTGATACAATTATCGGAGAAACCGGCGAAGAAAGCAAAAAATCGTGTCCTTAGAAAGAGAGAAAAAAATTGA 549 0.459 MGRRKIEIAMVQDANTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDAVAAQYLQIEPKSNEAQTKASSKRAKNKNNMEKLNRELAHWKEQLHEEEKMGDLHDVAINQAMGTQRFELQQRFASLQRLRSSVRGRIDEIEAAESLIQLSEKPAKKAKNRVLRKREKN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1714 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Apr2g1714 182 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr2g1714 182 MobiDBLite consensus disorder prediction 80 95 - -
Apr2g1714 182 PANTHER MADS BOX PROTEIN 2 173 - -
Apr2g1714 182 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Apr2g1714 182 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Apr2g1714 182 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 173 - -
Apr2g1714 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr2g1714 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr2g1714 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr2g1714 182 Coils Coil 87 114 - -
Apr2g1714 182 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr2g1714 182 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1714 Apr-Chr2 22752927 22753475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1714 1 166 Type I MADS-box Gene Family AT2G34440 43.023 9.11e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr2g1714 SRF-TF 2.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1714 - - gmx:100791127 173.326