Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1713 ATGGCAATTGGCAGCAAGAAGCAGGTGCAAGAGATGGGTCGTAGAAAGATTGAGATTGCGAAGATAAAAGACACAAACACAAGACAAGTCACCTTCTCAAAGCGTCGAACCGGTTTGTTCAAGAAAGGTAATGAGATATCGATCTTGTGTGGCGTAGACATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCCTTTGGGCACCCTGGGGTTGATGCTGTTGCGGCCCAGTATCTTCAAATAGAGCCCAGATCCAATGAGGCCCAAAGTGGGGCCCACAATAACATGGAGAAGCTGAATCAAGAACTTGCTTATTGGAAGGAGCAATTGCATATGGTTGAAAAGAAGGGGGCATCGCATTTTGAGGCCATAAATCAAGTTTTGGGGACCCAACACTTTGAGCTTCAACAAAGAATTGATTCACTTCAATGGCTTAGATCAAGTGTGAGGGATAGTATTGGTGACATCGAGGCAGCGGAATCTTTGATTCTCTTAGCACAAAAGCCAGTGAGAGGAGTGAAAAACCGTGTCCCTAAAAAGAAAGGAAAAAATTGA 561 0.4439 MAIGSKKQVQEMGRRKIEIAKIKDTNTRQVTFSKRRTGLFKKGNEISILCGVDIAIVVFSPGNKPYSFGHPGVDAVAAQYLQIEPRSNEAQSGAHNNMEKLNQELAYWKEQLHMVEKKGASHFEAINQVLGTQHFELQQRIDSLQWLRSSVRDSIGDIEAAESLILLAQKPVRGVKNRVPKKKGKN* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1713 186 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 13 178 - -
Apr2g1713 186 PANTHER MADS BOX PROTEIN 13 178 - -
Apr2g1713 186 Coils Coil 98 118 - -
Apr2g1713 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Apr2g1713 186 Gene3D - 24 106 IPR036879 GO:0003677|GO:0046983
Apr2g1713 186 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Apr2g1713 186 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Apr2g1713 186 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Apr2g1713 186 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Apr2g1713 186 SUPERFAMILY SRF-like 12 85 IPR036879 GO:0003677|GO:0046983
Apr2g1713 186 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1713 Apr-Chr2 22745936 22746591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1713 12 170 Type I MADS-box Gene Family AT2G34440 37.931 7.04e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr2g1713 SRF-TF 8.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1713 - - gmx:100791127 174.866