LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr2g1699	ATGGACTCCGATTCGGATTCCGACGGGTCTTACGTCTCTGCAACTCCACCAAGACAATCAACTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACTACAGCCACCTCTTATAGTTTCCTCTAAATCCAGAATCAGAATCAAACCCTCAAGATCCAAAACACTCCCTTCCAAACCCTCCAAAACTCCATCCAAACCCGACCCGACCCACCAAGACTCTTTCTCCCTTCCCACCATTCTTCCCTTCCAAATTCGGCGACCCTCTGATTGCATTTCTGCGCCGTCAACTTCTCTCTCCATCGAAACCCTCCCCGCCGGCTTCTTCTTCTCCAACTCCGCTCACTTCTCCAAGATTCGAAGACCCCTCGGCAATCTAGAAGTTTATGGAACCGAACCGCTTCTTAGACCCAAGGTTGAGAGTGGCGAAGCTAGGAAACAGGGAAAGAAGCTGTACCCTAATTTGATAGGTGCTAGCGCGCCAATGCCGAATGTGAAGTTGCGAAACAGTGGTGGTGAAGGGAATTATGTGAAGCTGAATTTGAGTGGAAAGAGAAGGAAGTTTGTTAACAAGGGATGGAAGAAAGGTGGAAAATTTGGTCATAAAAGGTACAAGAGAGGTAAGGGGAAATTGGAACGTGAAGGGGAGGATCAAGAGGAGCTGGCTGGTTTGGCTGCAGAAAGTGGACAATTGAAGCAAAGGGGGTGTTGTGGGACAAGACAGATTGATTGCAATGCAGTGGATGAGGCTGTAGCGACAGCGCGTGTTGACCCTTCGGATGAGAACTTGGTGAAGTTGTTGAAATTGATTTATGGATATGATTGTTTTCGAGAAGGGCAGCTGGAGGCAATCAAGATGGTTCTTGCTGGGAAGTCAGGCGTGCTTGTTTTGCCGACCGGTGCAGGGAAGTCGCTGTGTTATCAGTTGCCTGCTGTGGTTTTGCCTGGGATTACATTGGTTGTTAGTCCATTAGTGGCCTTGATGATTGATCAGTTAAGGCAATTGCCTCAAGTGATTAGGGGTGGTCTTCTATCCAGCACTCAGACAACTAAAGAAGTCTCTGAGTCGCTCAACCAGCTTCGACAAGGTGCAATAAAGGTGCTTTATGTTTCGCCAGAGCGGTTCCTGAACGAAGAGTTTCTGTCAACTATTTCTGCTATGCCAGCCATCTCACTTGTTGTTATTGATGAAGCACACTGCATATCTGAATGGTCTCACAATTTCCGACCTTCGTTTATGAGACTTAGAGCATCTCTGCTTCATAAAACACTTAATGTTGGTTCAGTTCTTGCAATGACAGCAACTGCTACAACCACAACTTTAGATGCTATCATGTCTGCTCTAGATATTCCTTGCACAAATCTTATTCAGAAGGCACAGTTAAGGGATAATTTTCAGTTGTCAGTGTCTTTGGTCAGAAATAGGCAAGTTAGTATATATTAATACTTTGAACGTAATAGAATGAAAGACCTGCTGAGTTTGATTAAGTCTCCTCCTTTTGCGGAAGTTCAAAGCATCATCATATACTGCAAATTTCAGTCTGAAACTGATCTAATTAGCAGGTATTTGAATGATAGCAATATCATGGCAAAGAGTTATCACAGTGGTATCACTGCAAAGGAACGTAGCTATGTACAGGAGTTGTTTAATTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCTGTAATTCATTATAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCATATTGTCACCTATTTTATGACGATGAGACTTATTTCAAACTTCGTAGTCTAACACATAGCGAAGTAGTAGATGAATATGCAGTAAACAAATTTCTGTGTGAAGTGTTTCCTGCTGACAAAAATTCCTGTGGGAAAATCTGTTCATTAATCAGAGAATCTGCTTCACGCAGGTTTGACATGAAAGAAGAGGTGATGCTCACACTCTTGACACGCTTGGAATTGGGTGAGGTTCAGTACTTGCAGTTACTTCCACAGATAAATGCGACTTGCACTTTGAGTTTTCATAAGACTTCTCCACCAGTCCTTGCTCAAAAGGCTTCTGTTATAGCTGTAATTCTAAAAAGGTCCGAAAATAAGCATGGGCAATATGTTTTTGACATTCCAACTGTGGCAAACGACATAGGGGTTACAGCAGTTGAAATAACAAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATTGTTGAAGTCCCAACAGACTTATTATGTCTATCAGCAGATATTATCCGATGGTTATCAGAAGTTGAAAATTGTAAGGTAAGAAAACTGGATGTAATGTTTAATGCTGCATACTTCGCAGTAAACCTATGTGATAAGATGCAAGGTTGTAGTAGTGCTGATCACACACCATGCTTGCAAAAGAAAATAATGGATTACTTTGCTGGAGTCGATAATACTGATTTCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACAGGCTCGATTTACACCAAGAGCCATTGCGAGGATAATGCATGGAATTGCAAGCCCAGCCTATCCTTCAACAGCTTGGAGTAGAACTCATTTCTGGGGAAGGTATACGAATATAGACTTTAAGGTGGTGATGGAAGCAGCAAAGGGGGAACTTAAGAATATTGTTGAAAAAGATATGCTCTAG	2772	0.4336	MDSDSDSDGSYVSATPPRQSTPPPPPPPPPPLQPPLIVSSKSRIRIKPSRSKTLPSKPSKTPSKPDPTHQDSFSLPTILPFQIRRPSDCISAPSTSLSIETLPAGFFFSNSAHFSKIRRPLGNLEVYGTEPLLRPKVESGEARKQGKKLYPNLIGASAPMPNVKLRNSGGEGNYVKLNLSGKRRKFVNKGWKKGGKFGHKRYKRGKGKLEREGEDQEELAGLAAESGQLKQRGCCGTRQIDCNAVDEAVATARVDPSDENLVKLLKLIYGYDCFREGQLEAIKMVLAGKSGVLVLPTGAGKSLCYQLPAVVLPGITLVVSPLVALMIDQLRQLPQVIRGGLLSSTQTTKEVSESLNQLRQGAIKVLYVSPERFLNEEFLSTISAMPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLHKTLNVGSVLAMTATATTTTLDAIMSALDIPCTNLIQKAQLRDNFQLSVSLVRNRQVSIYYFERNRMKDLLSLIKSPPFAEVQSIIIYCKFQSETDLISRYLNDSNIMAKSYHSGITAKERSYVQELFNSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLTHSEVVDEYAVNKFLCEVFPADKNSCGKICSLIRESASRRFDMKEEVMLTLLTRLELGEVQYLQLLPQINATCTLSFHKTSPPVLAQKASVIAVILKRSENKHGQYVFDIPTVANDIGVTAVEITNQLYDLKLMGEITYEMKDLAYCYRIVEVPTDLLCLSADIIRWLSEVENCKVRKLDVMFNAAYFAVNLCDKMQGCSSADHTPCLQKKIMDYFAGVDNTDFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAIARIMHGIASPAYPSTAWSRTHFWGRYTNIDFKVVMEAAKGELKNIVEKDML	924

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr2g1699	922	Pfam	DEAD/DEAH box helicase	277	438	IPR011545	GO:0003676\|GO:0005524
	Apr2g1699	922	CDD	DEXHc_RecQ4-like	262	455	-	-
	Apr2g1699	922	MobiDBLite	consensus disorder prediction	17	36	-	-
	Apr2g1699	922	MobiDBLite	consensus disorder prediction	1	74	-	-
	Apr2g1699	922	PANTHER	DNA HELICASE RECQ FAMILY MEMBER	51	845	-	-
	Apr2g1699	922	SMART	ultradead3	270	466	IPR014001	-
	Apr2g1699	922	MobiDBLite	consensus disorder prediction	1	16	-	-
	Apr2g1699	922	CDD	SF2_C_RecQ	460	604	-	-
	Apr2g1699	922	Gene3D	-	243	451	IPR027417	-
	Apr2g1699	922	ProSitePatterns	DEAH-box subfamily ATP-dependent helicases signature.	389	398	IPR002464	-
	Apr2g1699	922	Gene3D	-	460	662	IPR027417	-
	Apr2g1699	922	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	314	613	IPR027417	-
	Apr2g1699	922	SMART	helicmild6	514	595	IPR001650	-
	Apr2g1699	922	MobiDBLite	consensus disorder prediction	52	74	-	-
	Apr2g1699	922	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	282	452	IPR014001	-
	Apr2g1699	922	TIGRFAM	recQ_fam: ATP-dependent DNA helicase, RecQ family	264	621	IPR004589	GO:0004386\|GO:0006310
	Apr2g1699	922	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	484	641	IPR001650	-
	Apr2g1699	922	Pfam	Helicase conserved C-terminal domain	500	594	IPR001650	-
	Apr2g1699	922	PANTHER	ATP-DEPENDENT DNA HELICASE Q4	51	845	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr2g1699	Apr-Chr2	22630684	22638465	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr2g1699	504	627	Eukaryotic Initiation Factors Gene Family	AT3G19760	30.952	8.20e-13	69.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr2g1699	K10730		-	gmx:100811214	1358.97