Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1690 ATGATGGATGTTGCCGAGATTGAGGTTGAAGAAAATCTATTTGCCGCAAATGATGCCAAATTACACGGACAAATGTACAAGGATCTTTCTACAATGTATTGCAAAGTATTGTCAGTATTTCCTTCTTTAGAAGCAGCTAGGCCAAGGAGTAAATCTGGAATTCAGGCATTATGTGCATTGCACGTAGCCTTAGAGAAAGCCAAGAATGTTCTTCAGCACTGCTCAGAGTGCAGTAAACTGTACTTGGCAATAACTGGGGATTCTGTTCTTTTAAAATTTGAGAAGGCTAAATGCGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAACGAATTTGCAAGTATGGAATTTATGCTTGACCCATCAGAGAAGCAAGTTGGTGATAATTTAATTGTACTGCTCCAGCAGGGGAGAAAGTTTAATGACTCTAATGACAGTAATGAGCTTGAATCTTTTCATCAGGCTGCCACTAGGCTTGGAATCACATCTTCAAGAGCAGCTCTTACTGAAAGAAGAGCTCTAAGGAAACTCAGAGAAAGGGCTAAGGCTGAGGAAGACAAACGGAAGGAATCAATTGTTGTATATCTTTTACATCTTATGATAAAATATTCCAAATTGTTTAGAAACGAGTTCTCAGACGACAATGATTCTCAAGGTTCTGCCCCCTGTTCTCCCACTGTTCAGGGATATATTGAGGATGGTGTCGGTGGTCATTGTCAGGCCTTTGACAGACAGCTTTCAAAACTCAGTTCCTTCAAATTTAAGTCAAATAGTAATAGGAAATCAGGCCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCAATATCATTGCAACTTATGTATGATCCTGTTGTCATTGCTTCTGGGCAAACATATGAAAGAGTTTGCATAGAGAAATGGTTTAGTGATGGGCACAACAACTGCCCAAAGACCCAACATAAACTTTCACATCTTTCTTTGACTCCTAATTACTGTGTTAAGGGTCTCGTTACTAGTTGGTGTGAACAAAATGGTGTTCCTATTCCTGAAGGCCCTCCTGAATCTCCTGATCTTAATTACTGGGGATTGGTATTATCAGAGTCTGGATCTATTAATTCAAGATCTGTAAACAGTGTAAGTTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCCCTAGAAGAGAGTGGTATCTCAGAGGAAGCTGTGGAAAATGGAACTGAAAGTGTGTCTGGACATGAAGAAGACAATGAGCAGTATTTTAGTTTTCTGACTGTCTTGACTGTGGAGAACAATTGGAGGAGTAAATGTGAAGTGGTAGAACAGTTAAGGCTGTTACTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTTTGCAGTTTTTGCAATCAGCTGTGCATGGAGAGAATTTGATGGCTCAGGAAAGTGGGGCAATGGCTCTCTTTAACCTGGCTGTGAATAACAACAGAAATAAGGAAATGATGTTATCAGCTGGAGTATTATCACTGTTGGAGGAAATGATTTCTAACACTAATTGTTATGGTTGTGCAACTGCTTTATATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCTGTTCAGTTCCTAGTCCAGCTTCTTCAGTCTGAATCTGATGTTCAATGCAAGCAAGATTCGCTCCATGCCCTCTATAATCTTTCTACTGTGCCCTCCAATATTCCATACCTCCTTTCATCTGGCATCATTGATGGCCTACAATCCCTTCTTGTAGGCCAGGGTGACCGCATGTTGACAGAAAAATGCATAGTTGTTTTGATAAATTTAGCTACTTCTCAAGTAGGAAGGGAGGAAATCGTATCAAGTCCCGAGCTTATTAGTGCATTGGCTTCGATATTGGACTGTGGTGAGCTCGTAGAGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAATAGAAGTGAGAAATGCAGTGATATGCTCCTGCAAGAGGGGGTTATACCTGCATTGGTTTCAATGTCAGTGAATGGAACTCTAAGAGGTAAAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGAGAGCAGCGGCAACGAGACCATTCACCAGTTAAGACACATCTCTGCCCTCCTGAAACTGGTGATTTGCCTATGCCCCCTGCAGAAATGAAACCACTATGCAAGTCAATATCTAGAAGAAAGTCTGGGAAAGCTCTTAGCTTTTTCTGGAAAAGCAAAAGCTGTTCTGTTTACCAGTGTTAA 2304 0.4141 MMDVAEIEVEENLFAANDAKLHGQMYKDLSTMYCKVLSVFPSLEAARPRSKSGIQALCALHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFASMEFMLDPSEKQVGDNLIVLLQQGRKFNDSNDSNELESFHQAATRLGITSSRAALTERRALRKLRERAKAEEDKRKESIVVYLLHLMIKYSKLFRNEFSDDNDSQGSAPCSPTVQGYIEDGVGGHCQAFDRQLSKLSSFKFKSNSNRKSGQMPLPPEELRCPISLQLMYDPVVIASGQTYERVCIEKWFSDGHNNCPKTQHKLSHLSLTPNYCVKGLVTSWCEQNGVPIPEGPPESPDLNYWGLVLSESGSINSRSVNSVSSCKLKGVKVVPLEESGISEEAVENGTESVSGHEEDNEQYFSFLTVLTVENNWRSKCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSAVHGENLMAQESGAMALFNLAVNNNRNKEMMLSAGVLSLLEEMISNTNCYGCATALYLNLSCLEEAKPMIGMSQAVQFLVQLLQSESDVQCKQDSLHALYNLSTVPSNIPYLLSSGIIDGLQSLLVGQGDRMLTEKCIVVLINLATSQVGREEIVSSPELISALASILDCGELVEQEQAVSCLLILCNRSEKCSDMLLQEGVIPALVSMSVNGTLRGKEKAQKLLMLFREQRQRDHSPVKTHLCPPETGDLPMPPAEMKPLCKSISRRKSGKALSFFWKSKSCSVYQC* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1690 767 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Apr2g1690 767 CDD RING-Ubox_PUB 286 327 IPR045210 -
Apr2g1690 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Apr2g1690 767 Gene3D - 404 718 IPR011989 -
Apr2g1690 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Apr2g1690 767 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 759 - -
Apr2g1690 767 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Apr2g1690 767 SUPERFAMILY ARM repeat 429 705 IPR016024 -
Apr2g1690 767 SMART arm_5 457 501 IPR000225 GO:0005515
Apr2g1690 767 SMART arm_5 503 541 IPR000225 GO:0005515
Apr2g1690 767 SMART arm_5 625 667 IPR000225 GO:0005515
Apr2g1690 767 SMART arm_5 542 583 IPR000225 GO:0005515
Apr2g1690 767 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Apr2g1690 767 SUPERFAMILY RING/U-box 276 357 - -
Apr2g1690 767 Coils Coil 181 201 - -
Apr2g1690 767 PANTHER U BOX DOMAIN-CONTAINING 2 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1690 Apr-Chr2 22558745 22564303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1690 2 766 U-box Gene Family AT1G24330 64.698 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1690 - - gmx:100794099 1242.25