Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1686 ATGGTGAAGTACTCAAGAGAGCCCGATAATCCCACCAAGTCGTGCAAGGCTAGAGGTGCTGACCTTAGAGTTCATTTCAAGAACACCAGGGAAACTGCCCATGCCATCAGGAAGTTGCCCTTGGCTAAGGCTAAAAGATACTTGGAAGATGTTCTGGCCCACAAACAGGCCATCCCATTCAGACGTTTCTGTGGTGGTGTTGGGAGGACGGCCCAGGCAAAGAATAGACACTCTAATGGCCAAGGTCGGTGGCCTGTCAAATCAGCAAAATTCATCCTAGATTTGCTAAAGAATGCTGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCTCTGTACGTTACTCATATACAAGTCAATCAAGCGCAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCCTACATGTCATCTCCCTGCCACATAGAGTTGATATTATCTGAAAAGGAAGAGCCTGTCAAGAAAGAGGCCGAGACCCAGTTGGCAACAAGCAAGAAGAAGTCCCAAGCTCTTCGAAGTGGTGCTTCATCTTAA 549 0.4736 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYVTHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEAETQLATSKKKSQALRSGASS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1686 182 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Apr2g1686 182 MobiDBLite consensus disorder prediction 160 182 - -
Apr2g1686 182 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Apr2g1686 182 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
Apr2g1686 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 182 IPR005721 GO:0003735|GO:0006412|GO:0015934
Apr2g1686 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Apr2g1686 182 MobiDBLite consensus disorder prediction 168 182 - -
Apr2g1686 182 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Apr2g1686 182 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Apr2g1686 182 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 182 - -
Apr2g1686 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1686 Apr-Chr2 22516555 22519533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1686 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.813 3.98e-117 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1686 K02880 - csv:101211875 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2297 10 35030565 35032502 Apr2g1686 2 22516555 22519533 PCT