Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1671 ATGGAGTGGAATGCAAAATCTTCCCCACAGTGGGACTGGGAGCACGTTTTCTTGAATACAAAGCCAGCAGGAGAAAATTTAAAATTACAATCGCCGAACTGGAGTGGTGAAGCAAACCGTGAAATCAATGTTGAATTGTTTGATACATCGGGTGGCAGTGGTTGTTCTGGATCTGAGTTAATACATGCTTCTTCATCAAGGACCTCAAAATCAGCCTCCATCAATTCATCATCTAATATGGGTAGCAAAACATCTATATTCACTTTTGAAAATTCCCAAGATGATTCCAGTGCTAAAAAAGAATTATCTAAAGAAGAACCAGTAGAAACTTCTCATCCACTAGAGCCCTCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAACGGTTGTACTTTGAAGATGTTTGCCCAGGAAGTGATGCCAAGAACCTATCTTTCTCTAAGGATCCCATTTCATCTTTAAGTATAGGAAAGAAATGTAAGTCCAATGGTCAGAATGTACAATATCCATGCTGCCAGGTAGAAGGTTGTGGTGTTGACCTTTCATCGGCTAAAGATTACCACCGCAAACATAGAGTTTGTGAGAGTCATTCAAAATCCGCTAAAGTGATTGTAGCTGGTTTGGAGCGCCGATTTTGCCAACAATGTAGCAGGTTCCATGGTCTGTTAGAGTTTGATGAAAAAAAGAGAAGCTGCAGACGACGCCTTTTAGATCATAATGCAAGGCGCCGGAAACCTCTCCCTGAAGCTGTCCAATTAAGTAAATCAGCCTTGTCTTCAGCACCCTGTGAGGTGAGACAACAAATGAGTCCATTTGCTTATTCTAGGACTGCTGCAAATTTAGCTTGTCAAGACATACACAGCAGCAAGCTTCCCCTGACAAAAGATTTCCTCATGAAGCCTGCAAAAACAAATCCTGAGATGCCCAGAATTGTCACTATGCTTTCCAATGAGTCCGACATCTGTTTTACATCGAAAGGCCTTGCATCCAAAAGTATTGATCGAGGTGTAGAAGATTCCATAAACTCCTCTGATCCAAATGCTACGCAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAACGAATTCATGGGGTTCATACGAGAGTAAATCTATTTCTCTTGAACACTCCAGTCACACAATCACTACCACTCAGCCCATGACGCATGCAGTGAATCAGCGCTTACCCCTTGCTTCATCAGATTATTGGCATACCGATCAACCACTCAATTCCAGCATGTGGATCTACTCGAATAGTGATGACAACAATCGCTTTCACGAATTTCAGCTGTTCAGAGAACCTTACGAGTCTGGTTTTCCCTATGACCAGTTGGATTAA 1347 0.4224 MEWNAKSSPQWDWEHVFLNTKPAGENLKLQSPNWSGEANREINVELFDTSGGSGCSGSELIHASSSRTSKSASINSSSNMGSKTSIFTFENSQDDSSAKKELSKEEPVETSHPLEPSSVSGEPLLTLKLGKRLYFEDVCPGSDAKNLSFSKDPISSLSIGKKCKSNGQNVQYPCCQVEGCGVDLSSAKDYHRKHRVCESHSKSAKVIVAGLERRFCQQCSRFHGLLEFDEKKRSCRRRLLDHNARRRKPLPEAVQLSKSALSSAPCEVRQQMSPFAYSRTAANLACQDIHSSKLPLTKDFLMKPAKTNPEMPRIVTMLSNESDICFTSKGLASKSIDRGVEDSINSSDPNATQDFHRALSLLSTNSWGSYESKSISLEHSSHTITTTQPMTHAVNQRLPLASSDYWHTDQPLNSSMWIYSNSDDNNRFHEFQLFREPYESGFPYDQLD* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1671 448 MobiDBLite consensus disorder prediction 94 111 - -
Apr2g1671 448 Pfam SBP domain 175 248 IPR004333 GO:0003677
Apr2g1671 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 447 - -
Apr2g1671 448 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677
Apr2g1671 448 MobiDBLite consensus disorder prediction 57 93 - -
Apr2g1671 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 447 IPR044817 GO:0003677
Apr2g1671 448 MobiDBLite consensus disorder prediction 57 121 - -
Apr2g1671 448 Gene3D - 165 236 IPR036893 GO:0003677|GO:0005634
Apr2g1671 448 SUPERFAMILY SBT domain 173 254 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1671 Apr-Chr2 22369283 22374411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1671 1 411 SBP-box Gene Family AT5G43270 37.907 2.78e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr2g1671 SBP 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1671 - - gmx:100781289 531.176