Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1667 ATGAGTTTGCTCCATGTAGTTGGGTTTGGTCTAAAAGTGGGGCATCTACTTTTGGTGTTATGTTGCTGGGTTGTGTCTGTCGTTTACCTTAACTGGTTCTTTAGCAGTGGTGGAATAATAGACACCAAGATGGGTTTTCCAGGTGGTGGTGGTGGCAAGATGTGGCTCAAATGGTGGGAGAAGATCTCAGGGCAGGGTTGCAAAATCCACCAACAGTACTATCAGTATATTGGGTCCAAGATAGTGAAGAGGGCGTTGGGGAGAAAGCTTTTGCTGACATGGGTAGTGGGTTGGACCATAGTATCTTTGTGGATCTTCTGCTACATGAGCCTACAAGCTACTGATAAGAGGAAAGAAACTTTGGCTAGCATGTGTGATGAAAGGGCTAGGATGCTTCAGGATCAGTTTAATGTGAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTCAACCTTCCACCATGCGAAGAACCCCTCAGCCATCGATCAGAATACTTTTGCTAGGTACACTGAAAGAACTGCTTTTGAGAGGCCTCTTACGAGTGGTGTTGCATATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAATTTGAAAAGCAACAAGGTTGGACTATAAAGAGGATGGATACTCTGGAGCAGAACCCAGTTCATAAGGACGATTACGCCCCAGAGGCATTGGAGCCATCCCCCATTCATGAAGAATATGCTCCTGTCATCTTTGCACAGGATACAATTGCACATGTGATTTCTGTTAATGTGCTTTCTGGAAAGGAGGACCGTGAAAACGTGCTGCGTGCAAGAGAATCAGGCAAAGGAGTGTTAACTGCGCCCTTCAGGCTGCTCAAAACAAATCGTCTAGGGGTTATCCTGACATTTGCTGTGTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAGCTGATGGGTATCTAGGGGGAGTCTTTGATGTTGAGTCATTAGTGGAGAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAATTGTTAATGTGTACGATACGACAAATCATACTCATCCAATTCCCATGTATGGCACAAATGAGTCAGGGGATGTGTTCTATCACGTCAGCACTCTTAACTTTGGAGATCCTTTTAGGAAGCATGAGATGCACTGCAGGTTCAAGCAGAAACCACCATGGCCATGGTTGGCAATAACTACTTCAATTGGCATCCTTGTTATTGCACTCCTTGTTGGACATATTTTCCATGCTACTGTGAATCGAATTGCCAAAGTAGAAGATGATTGCCGAAAGATGAAGGAGCTTAAGAAACGAGCTGAGGCAGCTGATATTGCAAAATCCCAGTTTCTTGCTACTGTTTCACATGAGATCAGAACACCAATGAATGGTGTCTTAGGGATGCTGCATATGCTTATGGACACAGATCTAGATGTAACCCAACAGGAATATGTCAGGACTGCACAGGAAAGTGGAAAAACTCTTGTTTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATTTGGTAGGCTAGAGCTTGAGTCTGTGCTCTTTGACTTACGGTCAATTTTGGATGATGTATTGTCACTATTTTCTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTGTATGTGTCGGATCAGGTTCCAGAATTGCTAATAGGTGATCGAGGAAGATTTCGACAAATTATTACCAATCTCATGGGTAACTCAATCAAGTTCACCGACAAAGGACATATTTTTGTCACTATCCATCTTGTTGAGGAGGTTGTCCATTCAATAGAGGTTGACAGAGAATCCAACTCAGAAAATACCTTGAGTGGTTCCCCTGCAGCAGATAATCGCCGGAGCTGGGAAGGATTCAAGGCTTTCAGTCAAGAGGGACCTCTTGGTTCTTTCTCATCCTCCTCAAATGATCTTGTCAGTTTGATTGTGTCTGTTGAGGATACAGGTGAAGGTATTCCTCTGGAAGCCCAGCCCCTCATCTTCACTCCATTCATGCAGGTAGGTCCATCCATCTCCCGAAAGCATGGGGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGGGAAATTGGATTTGTAAGCATACCCAAGGTTGGATCCACATTCACTTTTACTGCTGTCTTCACCAATGGACACCGCAGTTCAAATGAGTGTAAAATTCAGCAAATAAACAACCAACCTCAGGCTGCATCTTCAGAATTTGAGGGGATGACTGCATTGATTATTGATCCAAGACCTGTTAGAACAAAAGTTTCTAGATATCACATCCAACGGCTTGGCATTCATGTTGAAATGGTTTCAGATTTAAACCAAGCTTTGTCAACCATAAGCAATGGGAGTATAGTTATTAATATGGTCCTGATTGAGCAGGAGGTCTGGGATAGAGATTTAGGCTTGTCATCTCACTTTGTCAATAGCACAAGGGAAGTTGATCATGGGGTTCCTCCAAAGCTGTTCATTCTTGTTAATTCTAGTAGTTCTTTTAAAGCAAGTAGTGTAAACTTGGGTGTTCATAATCCTACTGTCATCACGAAGCCTCTGAGAGCAAGCATGCTTGCTGCATCACTACAGCGAGCCATGGGTGTCCGGAACAAGGGAACTCCTCGAAATCGAGAGCTTCAAAGTTTATCTCTTCGCCATCTTCTTGGGGGCAGGAAAATTCTAATTGTAGATGACAATAGTGTGAACCGTGCAGTAGCTGCTGGTGCTTTGAAGAAGTATGGGGCAGACGTGGTTTGTGTTAGCAGTGGAAAAGAGGCCATCTCTTCATTGACGCCACCACATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGACGGTTTTGAAGCTACAGTGCAAATTAGGAAGATGGAAGATAGTGTGAACAGAGAAGCATCTATGGATGAGTTTAAGAATATTTCAAACTGGCATGTGCCCATTTTAGCCATGACTGCGGATGTATTCCAAGCTACACATGAGAAATGCCTAAAGAATGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTCTATAGAGAAGTTTCACGGTTTTTCCAGTCATCTTGA 3096 0.4338 MSLLHVVGFGLKVGHLLLVLCCWVVSVVYLNWFFSSGGIIDTKMGFPGGGGGKMWLKWWEKISGQGCKIHQQYYQYIGSKIVKRALGRKLLLTWVVGWTIVSLWIFCYMSLQATDKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQNTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPIHEEYAPVIFAQDTIAHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQAADGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGTNESGDVFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEDDCRKMKELKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKTLVSLINEVLDQAKIEFGRLELESVLFDLRSILDDVLSLFSEKSQGKGVELAVYVSDQVPELLIGDRGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVHSIEVDRESNSENTLSGSPAADNRRSWEGFKAFSQEGPLGSFSSSSNDLVSLIVSVEDTGEGIPLEAQPLIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKVGSTFTFTAVFTNGHRSSNECKIQQINNQPQAASSEFEGMTALIIDPRPVRTKVSRYHIQRLGIHVEMVSDLNQALSTISNGSIVINMVLIEQEVWDRDLGLSSHFVNSTREVDHGVPPKLFILVNSSSSFKASSVNLGVHNPTVITKPLRASMLAASLQRAMGVRNKGTPRNRELQSLSLRHLLGGRKILIVDDNSVNRAVAAGALKKYGADVVCVSSGKEAISSLTPPHQFDACFMDIQMPEMDGFEATVQIRKMEDSVNREASMDEFKNISNWHVPILAMTADVFQATHEKCLKNGMDGYVSKPFEAEQLYREVSRFFQSS* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1667 1031 ProSiteProfiles Response regulatory domain profile. 896 1028 IPR001789 GO:0000160
Apr2g1667 1031 Gene3D CHASE domain 162 391 IPR042240 -
Apr2g1667 1031 SMART CHASE_2 158 359 IPR006189 -
Apr2g1667 1031 SMART HKATPase_4 557 720 IPR003594 -
Apr2g1667 1031 PANTHER TWO-COMPONENT HISTIDINE KINASE 57 1030 - -
Apr2g1667 1031 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 499 715 IPR036890 -
Apr2g1667 1031 PANTHER HISTIDINE KINASE 3 57 1030 - -
Apr2g1667 1031 CDD PRTases_typeI 844 924 IPR000836 -
Apr2g1667 1031 Gene3D - 109 161 - -
Apr2g1667 1031 PRINTS Bacterial sensor protein C-terminal signature 645 659 IPR004358 GO:0016310|GO:0016772
Apr2g1667 1031 PRINTS Bacterial sensor protein C-terminal signature 663 673 IPR004358 GO:0016310|GO:0016772
Apr2g1667 1031 PRINTS Bacterial sensor protein C-terminal signature 680 698 IPR004358 GO:0016310|GO:0016772
Apr2g1667 1031 CDD HisKA 445 506 IPR003661 GO:0000155|GO:0007165
Apr2g1667 1031 ProSiteProfiles Histidine kinase domain profile. 452 720 IPR005467 -
Apr2g1667 1031 SUPERFAMILY CheY-like 744 872 IPR011006 -
Apr2g1667 1031 SMART HisKA_10 445 510 IPR003661 GO:0000155|GO:0007165
Apr2g1667 1031 Pfam Response regulator receiver domain 897 1023 IPR001789 GO:0000160
Apr2g1667 1031 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 432 511 IPR036097 GO:0000155|GO:0007165
Apr2g1667 1031 ProSiteProfiles Response regulatory domain profile. 748 870 IPR001789 GO:0000160
Apr2g1667 1031 ProSiteProfiles CHASE domain profile. 158 384 IPR006189 -
Apr2g1667 1031 Coils Coil 422 442 - -
Apr2g1667 1031 Pfam His Kinase A (phospho-acceptor) domain 445 508 IPR003661 GO:0000155|GO:0007165
Apr2g1667 1031 SUPERFAMILY CheY-like 893 1028 IPR011006 -
Apr2g1667 1031 SMART REC_2 895 1024 IPR001789 GO:0000160
Apr2g1667 1031 Gene3D - 413 508 - -
Apr2g1667 1031 Gene3D - 891 1031 - -
Apr2g1667 1031 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 557 718 IPR003594 -
Apr2g1667 1031 Pfam CHASE domain 161 357 IPR006189 -
Apr2g1667 1031 Gene3D - 509 722 IPR036890 -
Apr2g1667 1031 CDD REC_hyHK_CKI1_RcsC-like 897 1024 - -
Apr2g1667 1031 CDD HATPase_EvgS-ArcB-TorS-like 562 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1667 Apr-Chr2 22329545 22336954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1667 1 1030 Miscellaneous Gene Families AT1G27320 68.446 0.0 1412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr2g1667 CHASE 8.5e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1667 K14489 - gmx:100776798 1845.86