Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1662 ATGGGCAAGAAGAAGGTGGAGATGAAGCGAATCGAGGACAAAAGCACTCGTCAAGTAACGTTTTCGAAGAGGCGCAACGGATTGATGAAGAAGGCTCGCGAGTTATCCATTCTCTGCGACGCCAAAGTGGCTCTCGTCATATTCTCCAGCACCGGGAAGCTCTTCGAGCTTTGCAACGGTGACAGTTTGACCAAGGTCCTCCAGCGATACTGGGATTGTTTAGAAGCAAGCGACGCAGCCTCAAAGCCGGAACTCCTATTTGAAATTGCGGATATCTGGTCTGGTGCAGCGTTTTCTCAATTGGTCAAAAGGCACTTTGGTGTTTCTGAACCTGAGCATTTGAGTGTGACTGAACTTATGGAACTAGAGAAACTGATTCACACTGCACTTTCGCAAATCAGATCAGCAAAGGTACGATTGATGATTGAATCTGTGGTGAACCTTAAGAAAAAGGAACATATCTTGAGCAAAGAAAATGAGCTTCTGGAGAAACAGATAGCGGCACAAGAAAAAGCTAGTGACATCGATAAGGCAATTACACGCTCTATGGAAGGTGCTAAAACCGATCCGGTCGTGCATAATCTGTTTCCTGGTCTCTGA 600 0.46 MGKKKVEMKRIEDKSTRQVTFSKRRNGLMKKARELSILCDAKVALVIFSSTGKLFELCNGDSLTKVLQRYWDCLEASDAASKPELLFEIADIWSGAAFSQLVKRHFGVSEPEHLSVTELMELEKLIHTALSQIRSAKVRLMIESVVNLKKKEHILSKENELLEKQIAAQEKASDIDKAITRSMEGAKTDPVVHNLFPGL* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1662 199 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Apr2g1662 199 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Apr2g1662 199 Coils Coil 145 172 - -
Apr2g1662 199 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Apr2g1662 199 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr2g1662 199 Pfam K-box region 97 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr2g1662 199 PANTHER MADS-BOX PROTEIN FLOWERING LOCUS C 1 177 - -
Apr2g1662 199 PANTHER MADS BOX PROTEIN 1 177 - -
Apr2g1662 199 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr2g1662 199 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Apr2g1662 199 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr2g1662 199 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr2g1662 199 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr2g1662 199 ProSiteProfiles K-box domain profile. 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1662 Apr-Chr2 22267935 22284270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1662 1 170 MADS-box Gene Family AT1G26310 43.575 2.73e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr2g1662 K-box 5.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1662 K09264 - gmx:100804540 285.034