Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1661 ATGGGAAGAGGAAGAGTGGAATTGAAGAGAATTGAGAACAAGATCAATAGGCAAGTGACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTCGAGAGGTATCAGAAATGTAACTATGGTGCTCCTGAGGCGAATGTGTCTACACGGGAAGCTTTGGTAATGGAGTTCAGTAGTCAACAGGAGTACTTGAAGCTGAAAGCACGTTATGAAGCTCTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGATCTCGAGTCACTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACCCAATTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGGAGCACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGCAGTTGGAAGGGTACCAAATAAATCCACTGCAACTGAATCCCAGTGTTGAAGACATGGGATATGGTCGGCATCCAGCTCAAACTCAGGGTGATGCCCTCTTTCAACCATTGGACTGTGAGCCAACGTTACAAATTGGTTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGCCCAAGCATGAGCAATTACATGGCAGGATGGTTACCATAG 735 0.4626 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALVMEFSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKDLESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRQLEGYQINPLQLNPSVEDMGYGRHPAQTQGDALFQPLDCEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1661 244 Coils Coil 154 174 - -
Apr2g1661 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr2g1661 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr2g1661 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr2g1661 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr2g1661 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr2g1661 244 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Apr2g1661 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr2g1661 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr2g1661 244 ProSiteProfiles K-box domain profile. 91 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr2g1661 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Apr2g1661 244 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Apr2g1661 244 Coils Coil 128 148 - -
Apr2g1661 244 Pfam K-box region 94 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr2g1661 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 231 - -
Apr2g1661 244 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1661 Apr-Chr2 22258184 22266437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1661 1 244 MADS-box Gene Family AT1G24260 74.089 2.90e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr2g1661 K-box 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1661 - - gmx:100778931 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2320 10 35166327 35171832 Apr2g1661 2 22258184 22266437 PCT