Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1640 ATGCCTCACCGGAAAACCCTACTTTCTTTCTTCTTTTTCTTCACCGTCACGATTATCGCTGTCGCCGCCGATGATGGCGCCGTCATGTCTAAGCTTCTTAAATCGCTAACGCCCCCGCCCTCAGGATGGTCATCGGGAACTCCATTCTGCCAATGGAAGGGAATCAAATGCGATCCATCGAACCGCGTCACTAGCATAAACCTCGCCACACAGTCCCTCACCGGAACACTCCCCTCCGATCTCAATTCCCTCTCCCAACTCGCCACTCTCTCTCTCCAAGAAAACTCTCTCTCCGGCGCCATCCCCTCCCTCGCCAACCTCTCCGCCCTCCAAACCGTCTTCCTCGGCCACAACAACTTCACCTCCGTTGCCGCCAATGCCTTCGCCGGCCTCACCTCTCTACAAACCCTCAGCCTCGGTTCCAACCCTAACCTCGCACCCTGGACCTTCCCCACCGATATCACCTCCTCCTCAAACCTCAACAATCTCGACTTCGCCACCGTGAGCCTCACCGGTCCGTTACCTGACTTCTTTGACCAATTCCCCTCCCTCGTGAGCCTTCGCCTCTCCTACAATAACCTCACCGGTGCTTTACCTAACTCTTTCGCTGCTTCTTCAATCGCCAATTTATGGCTCAACAACCAGGAGACTGGCTTGTCGGGTACCATTCAGGTTGTCTCCAATATGACGCAGTTGACTCAGCTTTGGCTCCATAAGAACCAGTTCACTGGTCCTATTCCCGATTTGTCACAATGTAAGGGCTTGTTTGATTTGCAGCTCAGGGATAACCAGTTAACTGGTGTGGTTCCTGATTCTCTCATGAGTCTTTCTAGTTTGAAGAATGTTTCTTTGGATAATAACGAGCTTCAGGGGCCTGTGCCGGTGTTTGGAAAAGGGGTACAGGTTACTCTTGATGGGATCAATAGCTTTTGTAGGGATACTCCGGGACCTTGTGATCCCAGGGTGATGGTTTTGCTTCGGATTGCTGAGGCGTTTGGGTATCCCATTCGATTGGCGAGTTCGTGGAAAGGGAATGATCCGTGTCAGGGTTGGAGTTTTGTTGTGTGTGCTGCGGGGAAGATTATTACTGTGAATTTCGCGAAGCAGGGTTTGCAGGGTACCATCTCGCCTGCATTTGCAAATTTATCTGATTTGAGGAACTTGTATCTCAATGGGAATAATTTGACTGGTACTATACCTGAGAGCTTGATCACTTTGACTCAGCTTGAGACTCTTGATGTGTCTGATAACAACCTTTACGGAGAGGTTCCGAAATTCCCACCAAAGGTGAAGTTAGTGACTGCTGGTAACGCTTTGCTTGGGAAAACTCCTGGTTCTGGAGGTGGAGCAGGTGGAACTACTCCATCTGCAGGGTCTGCTCCTGGTGGAAGTCCGGCCGGATCGAACACGGGCGCATCTACGTTAACGCCTGGTTGGATTGTTGGTATAGTTGTTATTGTTATGTTTTTTGTTGCAGTGGTGTTGTTTGTGTCTTTCAAGTGTTATGCCAAAAACAGGCACAAGAAATTTGGGAGGGTTAATGGTCCTGAAGATGAAAAAGGAAGCTTTAAACGCGATGTTATAAGTGTTTCTAATGGATATGGTGGTGTTCCGAGCGAGTTGCAAAGCCAGAGCAGTGGTGATCGTAGTGACTTTCATGCTTTTGAGGGTGGAAATGCTACCATTTCGATCCAAGTTCTTCGACAAGTGACGAATAATTTCAGTGAGGATAACATTTTAGGCAGGGGAGGCTTTGGGGTTGTTTATAAAGGGGAGTTGCATGATGGAACTAAAATTGCTGTCAAGAGGATGGAATCTGTTGCAATGGGAAACAAAGGAATGAATGAGTTCCAAGCAGAGATTGCAGTTCTTAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTTTAGGATATTGCATCAATGGAAATGAAAGGCTTTTGGTGTATGAGTATATGCCTCAGGGCACATTGACACAGCATCTGTTTGAATGGCGTGAACATGGTTACGCTCCTTTGACTTGGAAACAAAGGGTAGCAATAGCTTTGGATGTAGCACGGGGGGTGGAATACTTGCACAGCTTAGCCCAACAAAGCTTCATTCACAGAGACTTAAAACCGTCAAACATACTACTTGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGATTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTTGGATATCTTGCACCTGAGTATGCAGCTACCGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGGGTAGTTTTGATGGAACTTATCACTGGTAGGAAGGCGTTGGATGATACTGTGCCAGATGAAAGGTCTCACTTGGTTACATGGTTCCGAAGGGTACTAATTAACAAGGAAAACATCCCAAAGGCAATTGATCAAACTCTCAACCCTGACGAGGAAACCATGGAGGGCATATATAAAGTGGCTGAGCTGGCAGGCCATTGCACGGCTCGTGAACCATACCAAAGGCCAGACATGGGTCATGCAGTGAATGTTTTGGTTCCTCTTGTGGAACAATGGAAACCTACCAGCCATGAAGAAGAAGACAACTTTGGCATTGACCTTCAGATGAGCCTTCCTCAAGCTCTCCGAAGGTGGCAAGCCAGCACTTCCTCGACATTTAATGACGTATCTTTCTCACAGACCCAATCTAGCATTCCCTCTAAACCTGCTGGATTTGCAAACTCCTTTGATTCAATGGATTGCCGATGA 2763 0.4745 MPHRKTLLSFFFFFTVTIIAVAADDGAVMSKLLKSLTPPPSGWSSGTPFCQWKGIKCDPSNRVTSINLATQSLTGTLPSDLNSLSQLATLSLQENSLSGAIPSLANLSALQTVFLGHNNFTSVAANAFAGLTSLQTLSLGSNPNLAPWTFPTDITSSSNLNNLDFATVSLTGPLPDFFDQFPSLVSLRLSYNNLTGALPNSFAASSIANLWLNNQETGLSGTIQVVSNMTQLTQLWLHKNQFTGPIPDLSQCKGLFDLQLRDNQLTGVVPDSLMSLSSLKNVSLDNNELQGPVPVFGKGVQVTLDGINSFCRDTPGPCDPRVMVLLRIAEAFGYPIRLASSWKGNDPCQGWSFVVCAAGKIITVNFAKQGLQGTISPAFANLSDLRNLYLNGNNLTGTIPESLITLTQLETLDVSDNNLYGEVPKFPPKVKLVTAGNALLGKTPGSGGGAGGTTPSAGSAPGGSPAGSNTGASTLTPGWIVGIVVIVMFFVAVVLFVSFKCYAKNRHKKFGRVNGPEDEKGSFKRDVISVSNGYGGVPSELQSQSSGDRSDFHAFEGGNATISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAMGNKGMNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWREHGYAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTVPDERSHLVTWFRRVLINKENIPKAIDQTLNPDEETMEGIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEDNFGIDLQMSLPQALRRWQASTSSTFNDVSFSQTQSSIPSKPAGFANSFDSMDCR* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1640 920 Pfam Leucine rich repeat 378 419 IPR001611 GO:0005515
Apr2g1640 920 Pfam Leucine rich repeat 86 143 IPR001611 GO:0005515
Apr2g1640 920 Pfam Protein tyrosine and serine/threonine kinase 577 848 IPR001245 GO:0004672|GO:0006468
Apr2g1640 920 Gene3D Transferase(Phosphotransferase) domain 1 652 876 - -
Apr2g1640 920 Pfam Leucine rich repeat N-terminal domain 324 356 IPR013210 -
Apr2g1640 920 Pfam Leucine rich repeat N-terminal domain 23 58 IPR013210 -
Apr2g1640 920 PANTHER OSJNBA0070M12.3 PROTEIN 5 920 - -
Apr2g1640 920 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Apr2g1640 920 Gene3D Phosphorylase Kinase; domain 1 538 651 - -
Apr2g1640 920 SUPERFAMILY L domain-like 32 428 - -
Apr2g1640 920 CDD STKc_IRAK 580 853 - -
Apr2g1640 920 SMART serkin_6 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1640 920 MobiDBLite consensus disorder prediction 443 469 - -
Apr2g1640 920 MobiDBLite consensus disorder prediction 449 469 - -
Apr2g1640 920 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 5 920 - -
Apr2g1640 920 MobiDBLite consensus disorder prediction 897 920 - -
Apr2g1640 920 SUPERFAMILY Protein kinase-like (PK-like) 552 850 IPR011009 -
Apr2g1640 920 ProSiteProfiles Protein kinase domain profile. 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1640 920 SMART LRR_typ_2 229 252 IPR003591 -
Apr2g1640 920 SMART LRR_typ_2 382 406 IPR003591 -
Apr2g1640 920 SMART LRR_typ_2 181 204 IPR003591 -
Apr2g1640 920 SMART LRR_typ_2 107 130 IPR003591 -
Apr2g1640 920 SMART LRR_typ_2 131 152 IPR003591 -
Apr2g1640 920 Gene3D Ribonuclease Inhibitor 320 443 IPR032675 -
Apr2g1640 920 Gene3D Ribonuclease Inhibitor 26 315 IPR032675 -
Apr2g1640 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1640 Apr-Chr2 22088102 22091670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1640 63 870 Receptor kinase-like Gene Family AT1G55610 31.083 3.83e-93 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Apr2g1640 PK_Tyr_Ser-Thr 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1640 - - gmx:100286794 1431.39