LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr2g1630	ATGGACGGAGCGCCGCCCTCCGCCGCCGTCGGAACCGGAGGCCCGGCGCCGTTCCTTCTGAAGACCTATGACATGGTGGACGACTCCTCCACCGACGACATCGTTTCGTGGAGCTCCACCAATGGCAGCTTCGTCGTTTGGAACCCGCCCGAGTTTGCTCGCCTTCTTCTTCCAACCTATTTCAAGCACAACAACTTCTCCAGCTTTATTCGCCAGCTCAATACCTACGGATTTCGAAAAGTACATCCTGAGCGATGGGAATTTGCTAATGATGATTTTGTGAAAGATCAAAAGCATCTTCTTAAGAATATACACCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCAGGTTCTCCAGTAGATCCAGAACGGGCAGCATTTGAGGAAGAAATAGAGAAACTTTCACGTGAGAAAACTGCTCTTGAATCCAATATTTATAGCTTCAAACAGCATCAGTCAACAGCAAAGCTTCAGCTGGAAGATTTTCTGCAACGATTAGATGGTATTGAGAAGAGGCAGAAACAATTGCTGAACTTCTTCGAGAAGGCTCTTCATAATCCTACTTTTGTTGAACATCTTTCACGCAAAATTGAGTCCATGGATTTATCAGCATATAATAAGAAAAGGCGATTGCCTCTGGTTGATCACATGCAACCAGTTGCTGAAAGTAACTTTATGGACAGTCATAGCAATTTTAGAATGGAATTTGGGAATGTTTTCCATCAAGATTTCTCAAATAAACTCAGGCTGGAATTGTCACCTGCTGTTTCAGATATGAACTTAGTATCACGCAGCACCCAGAGCTCAAATGAAGAGGGGGGAAGCCCACAGAAGAAGCTGTCTGAAGAACCAAAAGGAGTGCAGACAAGAACAGCTCTTGCATTTCCACCTGAAACATTAGAGCTTGCAGATACTGGGGCATCGTTTACTTTTAAAATGGATTCATGTTTATCACGAAGAGCAACAACTGCTGAGAGCCCAAAACTGCACTCTTTGGAGCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTTTGGCTTCTTGTCCATTGCAAGTCAACAGAAATTCATACTCAGCCAGATCACCCCAAATAGACTTTTCCTCAAACCGAAATGTAGCTGCTGAGACTGCCAATTTAGCTTCATCACATGAGGCTCCAAGTAACAACCAAGTTAACCCTGCTGCTCCAGATAGAGTGAATGATGTATTTTGGGAACAGTTCCTTACCGAAAGACCAGGTTGTTCAGACAATGAAGAGGCAATATCCAACTACCGAGCAAACCCATACGACGAACAAGATGAAGGGCGATCAGTTCATGGAATCTCTAGAAACATTAAGAACATGGATCAGCTCACACTTTGA	1383	0.4396	MDGAPPSAAVGTGGPAPFLLKTYDMVDDSSTDDIVSWSSTNGSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKVHPERWEFANDDFVKDQKHLLKNIHRRKPIHSHSHPPGSPVDPERAAFEEEIEKLSREKTALESNIYSFKQHQSTAKLQLEDFLQRLDGIEKRQKQLLNFFEKALHNPTFVEHLSRKIESMDLSAYNKKRRLPLVDHMQPVAESNFMDSHSNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEEGGSPQKKLSEEPKGVQTRTALAFPPETLELADTGASFTFKMDSCLSRRATTAESPKLHSLEPSSEEGDSHISCQLNLTLASCPLQVNRNSYSARSPQIDFSSNRNVAAETANLASSHEAPSNNQVNPAAPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQDEGRSVHGISRNIKNMDQLTL*	461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr2g1630	460	Pfam	HSF-type DNA-binding	18	107	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g1630	460	Gene3D	-	13	108	IPR036388	-
	Apr2g1630	460	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-5	11	456	-	-
	Apr2g1630	460	PRINTS	Heat shock factor (HSF) domain signature	18	41	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g1630	460	PRINTS	Heat shock factor (HSF) domain signature	56	68	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g1630	460	PRINTS	Heat shock factor (HSF) domain signature	69	81	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g1630	460	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	11	456	IPR027725	-
	Apr2g1630	460	MobiDBLite	consensus disorder prediction	436	460	-	-
	Apr2g1630	460	SUPERFAMILY	"Winged helix" DNA-binding domain	14	107	IPR036390	-
	Apr2g1630	460	ProSitePatterns	HSF-type DNA-binding domain signature.	57	81	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g1630	460	MobiDBLite	consensus disorder prediction	263	293	-	-
	Apr2g1630	460	Coils	Coil	125	145	-	-
	Apr2g1630	460	SMART	hsfneu3	14	107	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr2g1630	Apr-Chr2	22009713	22013874	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr2g1630	18	460	HSF	AT4G13980	57.802	2.27e-174	495

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Apr2g1630		HSF_DNA-bind	3.6e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr2g1630	K09419		-	gmx:100816484	796.193