Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1623 ATGTCTTCTGCCACCGCCGGCGTTACGCCCGACGAGCCTAACCAATACTTCTGCTACCAGTGCAACCGCAACGTCTCCATCACTCCTTCCACCGATCTCATCTGCCCCAATTGCAACGGTGGCTTCGTCGAGCAACTCCAAAATCCTATCCCTAATCCATTCTCATTCACCTACGAATTTGGCGACCACGATCTCGGAGACGCCGACGCCTTCAACCCCTTCCTATTCCTTCAAAACTACATTCAAACCCTCAGAGCCGGGGGCGCTAATGTTCAATTCGTCATCGACAACTCCGAGGACCCCACCGCCTCCGAAGCATTTCGTCTTCCCTCAAATCTCAACCTCGGCGATTACTTCTTTGGGCCTGGTCTCGAGCAATTGATTCAGCACCTCGCCGAGAACGATCCCAACCGTTACGGAACCCCTCCTGCTTCCAAGTCCGCAATCGAAGCGCTCCCAAACATCTCCGTTACGGAGGAATTGTTGGCTTCCGATTCTTCACAGTGTGCGGTGTGCAAAGACACGTTCGAGCTTCGGGAATTGGCTAAGCAGATGCCGTGTAAACACATTTATCATTCCGATTGCATTTTACCTTGGTTGGAATTGCACAATTCTTGTCCCGTGTGTAGGTTTGAGTTACCAACGGATGATCCTGAGTACGAGCAAAGGAATCGCTCCCAATCTGGTGATACAAATACCTCCCCAAGAGAGCGTAGGTTTAGGGTTTCTTTGCCTTGGCCGTTTAGCCAGTTTTCTGCCGCTGCTGAGACCAGCAATAACAATGGGAACGATAGTGGGGAATCGAATCGTAATTTTGAGTCTGAAAACAGGCAAGAAGACCTTGATTGA 849 0.5065 MSSATAGVTPDEPNQYFCYQCNRNVSITPSTDLICPNCNGGFVEQLQNPIPNPFSFTYEFGDHDLGDADAFNPFLFLQNYIQTLRAGGANVQFVIDNSEDPTASEAFRLPSNLNLGDYFFGPGLEQLIQHLAENDPNRYGTPPASKSAIEALPNISVTEELLASDSSQCAVCKDTFELRELAKQMPCKHIYHSDCILPWLELHNSCPVCRFELPTDDPEYEQRNRSQSGDTNTSPRERRFRVSLPWPFSQFSAAAETSNNNGNDSGESNRNFESENRQEDLD* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1623 282 MobiDBLite consensus disorder prediction 253 269 - -
Apr2g1623 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 216 IPR013083 -
Apr2g1623 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 67 251 - -
Apr2g1623 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 11 55 - -
Apr2g1623 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 251 - -
Apr2g1623 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 55 - -
Apr2g1623 282 Pfam zinc-ribbon 14 46 IPR039525 GO:0061630
Apr2g1623 282 MobiDBLite consensus disorder prediction 253 282 - -
Apr2g1623 282 CDD RING-H2_RNF126_like 168 210 - -
Apr2g1623 282 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
Apr2g1623 282 SUPERFAMILY RING/U-box 149 217 - -
Apr2g1623 282 MobiDBLite consensus disorder prediction 218 239 - -
Apr2g1623 282 Pfam Ring finger domain 168 210 IPR001841 -
Apr2g1623 282 SMART ring_2 169 209 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1623 Apr-Chr2 21949015 21951446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1623 127 226 C3H Transcription Factor Family AT5G15820 51.000 1.15e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1623 - K11982 lang:109333167 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1623 2 21949015 21951446 Apr2g1623 2 21949015 21951446 ECH