Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1621 ATGAATGAGAAAGCCAAAGTATCAAAGGAGCTCAATGCCAAGCACACCAAGATATTGGAAGGACTTCTTAAGCTGCCTGAGAACAGGGAATGTGCAGACTGCAGGAACAAGGCACCGCGATGGGCAAGTGTGAATCTAGGGATTTTCATTTGCATGCAATGTTCAGGGATTCACCGAAGTCTGGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACGTGGTTACCAGATCAAGTTTCTTTCATGCAATCTATGGGTAATCAGAAGTCAAATAAGCACTGGGAGGCGGCGATGCCACCAAATTTTGATAGAAGTAAAATGGGAATTGAGAAGTTTATTCATTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGATGAGTTACAGCCAACTTCAAAGTCAACTGAAACAATATGTAATTTTAATGAGTCACCAAACGGAGGGGCTAGGAATTGTGTTCCAAAGAACATTAGGAGACTTTCTCTTGAAGAAAGCATTCTAGCAAACCACATGGCACAAATTCTGCCACCAATGACAAGATCTACAGGGGGTTCTTTGATCATGCAAAAGAAGAATTCACCTCCATTAAAGAGGCCATCTTCATCAGTTGATTTTGACAAGTCCACAGGAAAGAGTAATGGTTCAGCTGACATTTTCAGCTTGCTTTGCATCCGTGACGATAAACAGAACTTCTCAATTGTTCCTCCTTCAAGCTGGGCAACATTTGATTGTTGGTTTGAGGACCAAGTTTTGAATCAACACACTGCCGCAGGATATAATTAA 789 0.417 MNEKAKVSKELNAKHTKILEGLLKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQSMGNQKSNKHWEAAMPPNFDRSKMGIEKFIHSKYVEKRWASKDELQPTSKSTETICNFNESPNGGARNCVPKNIRRLSLEESILANHMAQILPPMTRSTGGSLIMQKKNSPPLKRPSSSVDFDKSTGKSNGSADIFSLLCIRDDKQNFSIVPPSSWATFDCWFEDQVLNQHTAAGYN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1621 262 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 250 IPR044520 GO:0005096
Apr2g1621 262 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Apr2g1621 262 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Apr2g1621 262 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Apr2g1621 262 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 250 - -
Apr2g1621 262 CDD ArfGap 19 119 - -
Apr2g1621 262 SMART arf_gap_3 5 130 IPR001164 GO:0005096
Apr2g1621 262 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Apr2g1621 262 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Apr2g1621 262 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Apr2g1621 262 MobiDBLite consensus disorder prediction 180 214 - -
Apr2g1621 262 Gene3D Arf GTPase activating protein 1 132 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1621 Apr-Chr2 21931190 21936729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1621 19 108 C2H2 Transcription Factor Family AT3G07940 53.846 9.57e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1621 K12486 - gmx:100803735 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1621 2 21931190 21936729 Apr2g1621 2 21931190 21936729 ECH
Apr2g1621 2 21931190 21936729 Apr6g0917 6 13640765 13644776 PCT
Apr6g0915 6 13611660 13622138 Apr2g1621 2 21931190 21936729 PCT