Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1615 ATGGAGTACGGTGGCGGAGGCAGTGGGTCGCAGTCCCCAGGGGAGCAAGATGGTTCGGATTCCCAAGGAAGGAGAAAGCGTTACCATCGTCACACAGCCAACCAGATTCAGAGGCTTGAGTCAATGTTTAAGGAGTGCCCCCATCCAGACGAGAAACAGAGGATGCAGTTAAGCAGAGAATTGGGCTTAGCCCCGAGGCAGATCAAATTTTGGTTCCAGAACCGCAGGACCCAGATGAAGGCCCAGCACGAAAGAGCCGATAACTGCGCTCTTCGTGCAGACAACGACAAGATACGTTGCGAGAACATAGCCATCAGAGAGGCCCTGAAAAACGTTATTTGCCCTTCTTGCGGTGCCCCTCCTCTCAACGATGATTCTTATTTTGATGACCAAAAGTTGCGTTTGGAAAACGCCCATCTCAAAGAAGAGCTTGATAGAGTATCCAGTATTGCTGCAAAGTACATTGGAAGACCAATTTCTCAACTTCCCCCGGTTCAGCCTATGCATATATCGTCTTTGGACTTGTCCATGGCGAGTTTTGGAAATCAAGGAATGGTTGGGCCTGGGCCTGGGCCTGCTCCTTCCCTTAATCTTGATCTTCTCCCTGCAGGCACTTCCTCTTCTGTGCCAAATTTGCCTTATCAGCCTCCTTGCCTTTCCGACATGGACAAGTCACTTGTGTCGGACATTGCTTCCAATGCCATGGAAGAATTACTGAGGCTCTTGCACACGAACGAACCTTTGTGGATGAAGTCAAACACTGACGGGAGAGATGTTCTTAATTTTGATACCTACGAAAGAATGTTCCCCAAGCCCAACGCTCGGCCCAAGAATCCTAATGTTCGCGTGGAAGCATCCCGAGATTCTCGAGTTGTATCCATCAATAGCTTGGCTTTGGCAGACATGTTCATGGACCCAAACAAGTGGATGGAACTTTTTCCTACTATTGTTTCTGCGGCAAGGACTGTTCAAGTCATATCTTCTGGGATGATGGGTAGTTGCAGCGGTTCTTTGCAGTTGATGTATGAAGAGTTGTTAGTGCTTTCTCCACTTGTTTCTACTCGGGAGTTCTACTTCCTGCGTTACTGTCAGCAAATTGAGCAAAGCACGTGGGCTATAGTTGATGTTTCTTATGATTTTCCCCAAGACAACCACTTCGCCCCTCAATTTCGGTCTCATCGTCGTCCTTCTGGTTGCTTGATCCAGGACATGCCTAATGGGCATTCCAAGATTACTTGGGTTGAACACGTAGAGATTGAAGATAAAACTCTACCTCATCGCCTTTACAGAACTCTTATTTATAGTGGATTGGCATTTGGAGCTGAAAGATGGCTTGCTACTCTTCAGAGGATGTGTGAAAGACTTAACTGTCTAATGGTTACAAGCAGTCATACCGGGGATCTTGGAGGAGTAATTTCATCTCCTGAGGGTAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTGACCAATTTCTGTGCCAGCATTAGCACATCAAGTGGCCACCGATGGACCACGCTCTCTGGGTTGAATGAAATTGGAGTCAGAGTCACTGTTCAGAAAAGCACAGATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCCATGCCTCCACACACTGTGTTCAATTTCTTCAAGGATGAAAGAAAAAGACCCCAGTGGGATGTTCTTTCCAATGGTAATGCTGTGCAAGAGGTTGCTCACATAGCAAATGGTTCACACCCGGGTAACAGTATATCAGTTCTTAGAGCTTTCAACACCAGTCAGAACAACATGTTAATACTCCAAGAGAGCTGCATAGATTCATCTGGTTCACTAGTGGTTTATTGCCCAGTTGATCTACCATCCATCAACATAGCAATGAGTGGCGAAGACCCTTCATACATACCACTACTACCGTCAGGATTTACCATTTCCCCTGACGGCCAGGCCGAGCAAGAAGGAGATGGAGCATCGACGAGTTCAAATGCAAATAGGAACATAGGGAGCAGTGGTGGTTCACTAGTCACAGTTGCATTCCAGATTCTAGTGAGCAGTTTGCCATCTGCCAAGCTGAATATGGAGTCAGTGACAACTGTTAATAATCTTATTGGCTCCACTATCCAACAAATAAAGGCTTCCTTGAGTTGTCCCACCTAG 2160 0.469 MEYGGGGSGSQSPGEQDGSDSQGRRKRYHRHTANQIQRLESMFKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRADNDKIRCENIAIREALKNVICPSCGAPPLNDDSYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPMHISSLDLSMASFGNQGMVGPGPGPAPSLNLDLLPAGTSSSVPNLPYQPPCLSDMDKSLVSDIASNAMEELLRLLHTNEPLWMKSNTDGRDVLNFDTYERMFPKPNARPKNPNVRVEASRDSRVVSINSLALADMFMDPNKWMELFPTIVSAARTVQVISSGMMGSCSGSLQLMYEELLVLSPLVSTREFYFLRYCQQIEQSTWAIVDVSYDFPQDNHFAPQFRSHRRPSGCLIQDMPNGHSKITWVEHVEIEDKTLPHRLYRTLIYSGLAFGAERWLATLQRMCERLNCLMVTSSHTGDLGGVISSPEGKRSMMKLAQRMVTNFCASISTSSGHRWTTLSGLNEIGVRVTVQKSTDPGQPNGVVLSAATTIWLPMPPHTVFNFFKDERKRPQWDVLSNGNAVQEVAHIANGSHPGNSISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPSINIAMSGEDPSYIPLLPSGFTISPDGQAEQEGDGASTSSNANRNIGSSGGSLVTVAFQILVSSLPSAKLNMESVTTVNNLIGSTIQQIKASLSCPT* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1615 719 MobiDBLite consensus disorder prediction 646 666 - -
Apr2g1615 719 SMART START_1 229 454 IPR002913 GO:0008289
Apr2g1615 719 CDD homeodomain 24 83 IPR001356 GO:0003677
Apr2g1615 719 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 717 IPR042160 -
Apr2g1615 719 SMART HOX_1 23 86 IPR001356 GO:0003677
Apr2g1615 719 CDD START_ArGLABRA2_like 224 453 - -
Apr2g1615 719 Gene3D - 11 95 - -
Apr2g1615 719 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 717 - -
Apr2g1615 719 SUPERFAMILY Homeodomain-like 7 82 IPR009057 -
Apr2g1615 719 SUPERFAMILY Bet v1-like 221 456 - -
Apr2g1615 719 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Apr2g1615 719 Gene3D - 228 454 IPR023393 -
Apr2g1615 719 MobiDBLite consensus disorder prediction 1 31 - -
Apr2g1615 719 ProSiteProfiles START domain profile. 220 457 IPR002913 GO:0008289
Apr2g1615 719 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Apr2g1615 719 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Apr2g1615 719 SUPERFAMILY Bet v1-like 474 712 - -
Apr2g1615 719 Pfam START domain 230 454 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1615 Apr-Chr2 21904301 21907205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1615 20 719 Homeobox Transcription Factor Family AT1G73360 66.337 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr2g1615 START 2e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1615 K09338 - gmx:100796042 1271.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1615 2 21904301 21907205 Apr2g1615 2 21904301 21907205 ECH
Apr2g1615 2 21904301 21907205 Apr6g0931 6 13819675 13823296 PCT