Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1612 ATGTGTAGTAGAGGGCATTGGAGACCCGCTGAGGATGATAAACTTCGAGAGTTGGTGGAACACTACGGACCCCATAATTGGAACGCTATAGCTGAGAAGCTCCGAGGAAGATCAGGGAAGAGTTGCAGGTTGAGATGGTTCAACCAGTTGGACCCACGAATAAATAGAAGTCCTTTCACAGAGGAAGAAGAAGAACGTCTTGTAGCTTCTCACCGGATTCATGGTAATAGATGGGCAGTGATTGCTAGACTTTTCCCTGGAAGAACTGACAACGCTGTCAAGAATCATTGGCATGTCATGATGGCAAGGGTTCGTCGTGAAAGATCTAAACTTTATGCTAAACACCCTGCACTTCCTCGAACAAACCCTCACCATAACTCTAACTATGACACAACAACCTTCGCTTCTAGTTTTGTTGACAAGTGTAGCCCTTTCCAATTTACCAACAACCTTCACTTTCGAGTTCCAAGTTATTGTTCCACAATGCTTCAAGATAGGAGTCAATCAGTTGAGTTCTACGATTTTCTTCAAGTAAACACCGATTCGAATAAAAGCGAAGTGACGGACAATGTCAAGAGAGATGATGAGGAAGTAAATCAAGATGCTGCGGGATCGAAGAACAAAGAAGATGTTTCATTCATTGATTTTTTGTCTGTTGGAAGCTCCTAA 669 0.429 MCSRGHWRPAEDDKLRELVEHYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLVASHRIHGNRWAVIARLFPGRTDNAVKNHWHVMMARVRRERSKLYAKHPALPRTNPHHNSNYDTTTFASSFVDKCSPFQFTNNLHFRVPSYCSTMLQDRSQSVEFYDFLQVNTDSNKSEVTDNVKRDDEEVNQDAAGSKNKEDVSFIDFLSVGSS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1612 222 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Apr2g1612 222 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Apr2g1612 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Apr2g1612 222 MobiDBLite consensus disorder prediction 184 206 - -
Apr2g1612 222 SMART sant 3 52 IPR001005 -
Apr2g1612 222 SMART sant 55 103 IPR001005 -
Apr2g1612 222 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Apr2g1612 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Apr2g1612 222 MobiDBLite consensus disorder prediction 186 204 - -
Apr2g1612 222 CDD SANT 7 48 IPR001005 -
Apr2g1612 222 Gene3D - 57 126 - -
Apr2g1612 222 PANTHER MYB PROTEIN-RELATED 1 219 - -
Apr2g1612 222 Pfam Myb-like DNA-binding domain 7 67 - -
Apr2g1612 222 CDD SANT 58 101 IPR001005 -
Apr2g1612 222 Gene3D - 4 55 - -
Apr2g1612 222 PANTHER TRANSCRIPTION FACTOR MYB54 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1612 Apr-Chr2 21875846 21877752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1612 1 222 MYB Transcription Factor Family AT1G17950 56.522 5.88e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g1612 Myb_DNA-bind_6 9.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1612 K09422 - gmx:100811746 323.168