Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1609 ATGTTAGCCAATAATTCATCTCCCTCGTTAGTTCCCACTTCTGAACCGTTTTCCTGCGCTGAGAATGGTACTTCTACTAATAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTATCCCTCTCACCCAAGACCTTGCTTGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGAGACCAGAACCTTCAGATGCACCGGCGGCGCCACAAGGTGCCGTGGAAGCTACTAAAGAGAGAAACTCCGGTGGTGAAGAAGCGAGTGTTTGTGTGCCCTGAGCCTACTTGTTTGCACCATGACCCTTGCCATGCTCTTGGTGATCTCGTTGGCATCAAGAAGCATTTCAGGAGGAAACACAGCAATCACAAGCAATGGGTCTGTGAGAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACTTGTGGCACCAGAGGCCACTCTTGTGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGTTTCATTGAGCACCAAGACGCATGCAACATGGGTAGGTCTACACAGCCAGAAACGCAAGCTGCAGCAACTGCATGCTTGTCTCGAACAGCTTCAAGCCCTTCAAGCGACACCAATTTCAGCACAGGTGGTCCTTGGCCGATGGGCGTAATCATTCCAAAACACACAGTTATTGAAACCACATTATCCAACAACAATCTCTACCCCAATCTCGAGCTTCAGCTCTCTACGACCACAACATCCAATCCCATTGATGTTATTTCTGTAGCATCGCCTAAAGCTAAGAGAGAGGGAAACCGCTCCACACAGTTGCAGCTATCCATTGGGTCATCGGAAATAATAGTGAATGAGAAGAATGAATCATCACCAAACAGTGAAAAGTCATTGGGTGAAAGTGTTAAGGAACAGGCACGTGAACAGTTGAGGATAGCGATGGCGGAGAAAGCCTATGCAGAAGAGGCAAGGAAGCAAGCGAAGAAGCAGATCGAGCTGGCTGAGCTTGAGTTCACAAACGCCAAGAGGATCAGACAACAAGCACAAACGGAACTGGACAAAGCCTATGGTTTGAAGGAACATGCCATCAAACAGATAAATTCAACCATGCTTCAAATCACATGCCATGCTTGTAAACAAGAATTTCAATCACGAACCACAACAGCTTCACCGGACGACAACTCTTTGGTTTTGAGTTACATAACAACAGAAGGTGGCGAAGTAGAAAACCATGTCAAAAACGCTAACTCTTAG 1266 0.47 MLANNSSPSLVPTSEPFSCAENGTSTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRSTQPETQAAATACLSRTASSPSSDTNFSTGGPWPMGVIIPKHTVIETTLSNNNLYPNLELQLSTTTTSNPIDVISVASPKAKREGNRSTQLQLSIGSSEIIVNEKNESSPNSEKSLGESVKEQAREQLRIAMAEKAYAEEARKQAKKQIELAELEFTNAKRIRQQAQTELDKAYGLKEHAIKQINSTMLQITCHACKQEFQSRTTTASPDDNSLVLSYITTEGGEVENHVKNANS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1609 421 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Apr2g1609 421 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Apr2g1609 421 Coils Coil 307 355 - -
Apr2g1609 421 MobiDBLite consensus disorder prediction 288 303 - -
Apr2g1609 421 Gene3D Classic Zinc Finger 119 198 - -
Apr2g1609 421 MobiDBLite consensus disorder prediction 1 24 - -
Apr2g1609 421 MobiDBLite consensus disorder prediction 288 307 - -
Apr2g1609 421 Pfam Zinc-finger of C2H2 type 57 75 - -
Apr2g1609 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Apr2g1609 421 PANTHER OS03G0310200 PROTEIN 1 413 IPR039288 GO:0009630
Apr2g1609 421 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 413 - -
Apr2g1609 421 MobiDBLite consensus disorder prediction 1 44 - -
Apr2g1609 421 Gene3D Classic Zinc Finger 35 98 - -
Apr2g1609 421 SMART c2h2final6 57 79 IPR013087 -
Apr2g1609 421 SMART c2h2final6 98 128 IPR013087 -
Apr2g1609 421 SMART c2h2final6 134 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1609 Apr-Chr2 21828599 21831663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1609 21 414 C2H2 Transcription Factor Family AT2G01940 57.143 7.51e-152 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g1609 zf-met 0.023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1609 K25871 - gmx:100785333 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1609 2 21828599 21831663 Apr2g1609 2 21828599 21831663 ECH
Apr2g1609 2 21828599 21831663 Apr6g0954 6 14112596 14116174 PCT