Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1608 ATGGACGGAGGATCTGCAGAGAAGTGGAACAGTGTATATAGAGAGTGCTTAAGAAACCATGCAGCCAGCCTCGGAAGCTACGCCACCGACGGCTGCGGCGAGTTCACGGTGGAGGAGATGTCGGAGGCGCTACAATGCGCCGCATGCGGGTGTCACCGCAATTTCCACCGGAAAGTGAAGTACCCGGCGGCGACAACAGCGGCGACGCCGGAGACGACGGTGGTGGAGTACGGGGAAGGAGGGAGGGTGGTTGAGTCGGGTTCAGGGAGTAAGAAGCGGTTCAGGTCGAAGTTCACGGCGGAGCAGAAGGAGAAGATGTTGGCGTTTGCTGAGAAGCTTGGTTGGAAGCTTCAAAGGAAGGATATGGATGATGAGATTGAGAGGTTCTGCAAAGGTGTTGGCGTGAGTAGACAAGTTTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCTTCTTCTTCTTCTGCTTCTGCTTCTACCGGCAATGTCTCTTCTCTCACTCAGTAG 507 0.5365 MDGGSAEKWNSVYRECLRNHAASLGSYATDGCGEFTVEEMSEALQCAACGCHRNFHRKVKYPAATTAATPETTVVEYGEGGRVVESGSGSKKRFRSKFTAEQKEKMLAFAEKLGWKLQRKDMDDEIERFCKGVGVSRQVFKVWMHNHKNSSSSSSASASTGNVSSLTQ* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1608 168 SUPERFAMILY Homeodomain-like 83 149 IPR009057 -
Apr2g1608 168 Pfam ZF-HD protein dimerisation region 12 59 IPR006456 -
Apr2g1608 168 MobiDBLite consensus disorder prediction 148 168 - -
Apr2g1608 168 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 91 149 IPR006455 -
Apr2g1608 168 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 13 59 IPR006456 -
Apr2g1608 168 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 10 157 - -
Apr2g1608 168 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 13 58 IPR006456 -
Apr2g1608 168 Gene3D - 78 155 - -
Apr2g1608 168 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1608 Apr-Chr2 21817725 21818231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1608 1 157 ZF-HD Transcription Factor Family AT5G65410 38.974 2.50e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr2g1608 ZF-HD_dimer 5.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1608 - - pvu:PHAVU_002G332400g 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1608 2 21817725 21818231 Apr6g0956 6 14146891 14147514 PCT