Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1600 ATGGCAGTTGTTCGCGACCGCCGCCATCTCAACCTCCGTCTCCCCCTCCCGGAACCGTCCGAGCGGCGTCCCCGTTTTCCACTCCCACTTCCGCCGTCCTCCGCCGCCAGGCCTGACGCCATTGCCCCCGGCGACATCGAAAAGCTCCACGTCCTCGGCCACGGGAACGGCGGCACAGTCTACAAAGTCCGCCACAAGCGCACCTCCGCACTCTACGCCCTGAAGGTGGTCCACGCCGACTCGGACGCGGCCACGCGGCGGCAGGTCCGGCGAGAGATGGACATCCTCCGGCGAACGGATTCCCCTCACGTGGTCCAGTACCACGGGTTCTTCGAGAAACCCTCTGGTGACGTGGCAATCCTGATGGAGTACATGGAGTTAGGCACGGTTGAGACGCTTCTGAAAAACAACGGCACTTTCTCTGAGGCCCAACTGGCGGCAGTGGCGCGTCAGGTGCTGAGCGGGCTGAGCTACCTCCACGCGCACAAGATTATTCACCGCGACATTAAGCCCTCTAACCTCCTGGTGAACGAGAAGATGGAGGTCAAGATCGGGGATTTTGGTGTGAGCAAAGTGATGTGTCGAACTCTTGACGCGTGCAATTCATACGTAGGAACCTGCGCGTACATGAGTCCCGAGCGGTTCGACCCGGATTCCTATGGCGGGAATTATAACGGGTATGCGGGTGATATTTGGAGCTTGGGCTTGACCCTCTTTGAGCTTTACGTGGGCCACTTTCCGTTCCTTCCGATGGGCCAGAGGCCCGATTGGGCGACGCTTATGTGCGCTATTTGTTTTGGGGAGCCACCCACTTTACCTGAGGGTGCTTCCGAAGAGTTTGGGAGTTTCATTGGGTGTTGCTTAATTAAGGAGTCCACTGAACGGTGGACAGCGTCTCAGCTATTAACGCACCCTTTTCTTCGTTCTCATTCTTAG 936 0.5823 MAVVRDRRHLNLRLPLPEPSERRPRFPLPLPPSSAARPDAIAPGDIEKLHVLGHGNGGTVYKVRHKRTSALYALKVVHADSDAATRRQVRREMDILRRTDSPHVVQYHGFFEKPSGDVAILMEYMELGTVETLLKNNGTFSEAQLAAVARQVLSGLSYLHAHKIIHRDIKPSNLLVNEKMEVKIGDFGVSKVMCRTLDACNSYVGTCAYMSPERFDPDSYGGNYNGYAGDIWSLGLTLFELYVGHFPFLPMGQRPDWATLMCAICFGEPPTLPEGASEEFGSFIGCCLIKESTERWTASQLLTHPFLRSHS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1600 311 MobiDBLite consensus disorder prediction 21 36 - -
Apr2g1600 311 SMART serkin_6 46 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1600 311 Gene3D Phosphorylase Kinase; domain 1 32 126 - -
Apr2g1600 311 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524
Apr2g1600 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Apr2g1600 311 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 2 309 - -
Apr2g1600 311 Pfam Protein kinase domain 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1600 311 MobiDBLite consensus disorder prediction 14 38 - -
Apr2g1600 311 CDD PKc_MAPKK_plant_like 45 311 - -
Apr2g1600 311 SUPERFAMILY Protein kinase-like (PK-like) 43 309 IPR011009 -
Apr2g1600 311 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 309 - -
Apr2g1600 311 Gene3D Transferase(Phosphotransferase) domain 1 128 311 - -
Apr2g1600 311 ProSiteProfiles Protein kinase domain profile. 46 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1600 Apr-Chr2 21751590 21752930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1600 1 308 MAP Kinase Kinase Gene Family AT1G73500 64.839 2.98e-139 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Apr2g1600 Pkinase 2.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1600 K20604 - qsu:112004321 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1600 2 21751590 21752930 Apr2g1600 2 21751590 21752930 ECH