Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr2g1598 | ATGAGCTCGCAAGAGCGAAATCAACGAAGGGATAGGTCTAGGGTTTCTCGTCAGGAATGGATTCCTAGAGTGTCCACCGTCACCGCCGATCAGAGTCAGAATGGTGAAGCTGTTGGTAGCTCCAATCCAACTATTCGGCATAGAAGGAGTCGTCCTGTTCCTAAGAATCACGTGCACAAGGGATTGGTTTTGAAGGACTCTGATTTACCTCAGCTGCTGCAAGAGATTCAGGACAAGCTCACGAAAGGTGCTGTCGAATGCATGATTTGCTATGACATGGTTCGGAGGTCTGCACCTATCTGGTCATGTGCCAGTTGTTACTCTATCTTTCACCTTAATTGTATAAAGAAGTGGGCGCGAGCACCCACTTCTGTTGATTTGTCTGTAGAGAAGAATCAAGGGTTCAATTGGCGGTGCCCTGGTTGTCAGTCTGTGCAGCTCACATCATCCAAGGAGATTAGATACTTATGCTTCTGTGGAAAGAGGCCTGACCCGCCATCCGATTTGTATCTGACGCCACATTCCTGTGGAGAACCGTGTGGCAAGCCTCTTGAGAGGGAGCTTGGAGGGAACATGGAGGATCTTTGCCCTCATGTTTGTGTCTTGCAGTGTCATCCAGGCCCGTGTCCTCCTTGCAAAGCATTTGCGCCTCCACGTATGTGTCCTTGTGGGAAGAAAAATATTACCACTCGTTGCGCTGACCGGCAATCTGTTCTTACCTGTGGCCAGCCCTGTGAGAAGCTTCTTGAATGTGGGCGTCATCGGTGCGAACGAATTTGTCATCTGGGTCCTTGTGATCCTTGTCAGGTTCCAATCAATGCCTCTTGCTTTTGTAGTAAAAACATGGAGGTTATTCTTTGTGGAGAGATGGCTGTGAAGGGTGAAATCATAGCAGAAGGTGGAGTTTTTTCTTGTGGTTCCACTTGTGGAAAGAAACTTAGTTGTGGCAATCATATCTGTATTGAGAGTTGTCATCCAGGCAGCTGTGGGGAGTGTGACTTGTTACCATCCCATGTTAAGACATGCTATTGTGGGAAAACTAGATTGGAGGTGGAACGGCAGAGTTGTTTAGATCCTATACCTACCTGTTCACAAGTATGTGGGAGGTCCCTTCCTTGTGGGATTCATCATTGTAAAGAGGCATGTCATGCTGGGGAATGTTCTCCTTGTTTGGTTCTAGTCTCCCAGAAGTGTCGATGTGGCTCAACTTCCCGAACTGTGGAGTGCTGTAAGACAACAATGGAGAGTGAAAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAAATGTGGAAGGCACCGATGTAGTGAACGGTGTTGTCCCCTTTCTAATCCAAATAATATTCGAAATGTGGAATGGGATCCACACTTCTGTTCCATGCCATGTGGAAAGAAGTTAAGATGCGGGCAGCACGCATGTGAATCCCTGTGTCACACTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTAACATGTGCTTGTGGCCAGACTTCAATTCCTCCTCCATTGCCTTGTGGCACACCACCTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCTTGTTCCCATCCAGCCTCCCACAGCTGCCATTTTGGAGACTGCCCTCCTTGTTCAGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAGTTCTTAGGAACATACCATGTGGTTCAAAGGATATTAGATGCAATAAGCTCTGTGGGAAGACCAGACAATGTGGTTTACATGCCTGTGGCAGGACATGTCACCCCTCTCCTTGTGATAATCCATCTGCTGCACAAGGCACCCGAGCCTCTTGTGGGCAAACATGCGGCGCTCCTAGGAGAGACTGCCGGCATACATGTACAGCTCCTTGTCACCCATCAACTCCATGTCCGGATATAAGATGTGAATTCCCTGTCACAATTACTTGTTCTTGTGGCCGAATAACAGCAAATGTTCCTTGTGATGCTGGTGGCAGCTGTGCTAATTATAATGCTGATGCTGTACATGAAGCTTCCATTATTCAAAAGATGCCTGTACAGTTTCAACCAGTGGCTGCAAATGGCAAAAAAGTGCCCCTTGGACAAAGAAAACTGATGTGTAATGATGAGTGTGCTAAGTTAGAGCGTAAAAAGGTTCTTGCTGATGCTTTTGAGATAACCACTCCAAATATGGATTCTCTCCATTTTGGTGAGAATTCTGTTGCTTCTGAATTGATTGCTGACATGTTGAGACGTGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAGTTTTTAGTACTTGGCAAGAGCAGAGGGACTACACATGGTTTAAAAGTCCATGTTTTCTGTCCTATGATGAAGGACAAGACAGATTCTGTGAGGGTGATTGCTGAGAGATGGAGGCTTGCAGTGAATGCAGCTGGTCGGGAGCCAAAGCGCTTTGTAGTTGTTCATGTTACACCGAAGTCAAGACCTCCTCCTCGCGTGCTAGGGGTTAAGGGTACTACAACAGTAAATGTGCCTCTTCCTCCTGCTTTTGATCCTTTGGTAGACATGGATCCTCGACTTGTTGTCTCTTTTCTGGACTTACCAAGGGATGCAGATATTAGTGCGTTGGTGTTGAGGTTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCATTGGCTGTTTTTAATGACCCTGCCCGGGCTGCAACTGCAATGAGGAGGTTGGAGCATGGAACTGTTTATCAGGGAGCTGTTGTGGTTGTTCCAAATGTTGGGGCATCCGTAACATCTTCAGCTACCAATGCTTGGGGCGGATCTGGGTCAATGAAAGGAGGAGGAGCACTGGCAGCATTAAAGGGGAATCCGTGGAAAAAGGCTGTTGTTCAAGAGCCAGGTTGGAGAGAAGATTCTTGGGGTGATGAGGAGTGGGCTACTGGTTCTGATAATGTCCAATCATCCATTTGGAAGAAAGAAGCCCCACCAATATCTGCTTCATTAAATCCTTGGAGTGTCTTGGATCAAGAATCATCTTCAAGATCATCTGTTGCAGCCGTTAAAACTGATGTTTCTAGGAAACATTCTGAAAGCAGTGCTGTCACAAAGTTGGAGCCTCATGACGGTGGTTCAAATCTAGAAGGGCGGCATGCAGTAAACTTAGACGCATTAGAAGCTTCTGATGTAGTAGATGATTGGGAGCAGGCTTGTGAATAG | 3195 | 0.4645 | MSSQERNQRRDRSRVSRQEWIPRVSTVTADQSQNGEAVGSSNPTIRHRRSRPVPKNHVHKGLVLKDSDLPQLLQEIQDKLTKGAVECMICYDMVRRSAPIWSCASCYSIFHLNCIKKWARAPTSVDLSVEKNQGFNWRCPGCQSVQLTSSKEIRYLCFCGKRPDPPSDLYLTPHSCGEPCGKPLERELGGNMEDLCPHVCVLQCHPGPCPPCKAFAPPRMCPCGKKNITTRCADRQSVLTCGQPCEKLLECGRHRCERICHLGPCDPCQVPINASCFCSKNMEVILCGEMAVKGEIIAEGGVFSCGSTCGKKLSCGNHICIESCHPGSCGECDLLPSHVKTCYCGKTRLEVERQSCLDPIPTCSQVCGRSLPCGIHHCKEACHAGECSPCLVLVSQKCRCGSTSRTVECCKTTMESEKFTCEKPCGQKKKCGRHRCSERCCPLSNPNNIRNVEWDPHFCSMPCGKKLRCGQHACESLCHTGHCPPCLETIFTDLTCACGQTSIPPPLPCGTPPPSCQLPCSVPQPCSHPASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPSPCDNPSAAQGTRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDIRCEFPVTITCSCGRITANVPCDAGGSCANYNADAVHEASIIQKMPVQFQPVAANGKKVPLGQRKLMCNDECAKLERKKVLADAFEITTPNMDSLHFGENSVASELIADMLRRDPKWVLSVEERCKFLVLGKSRGTTHGLKVHVFCPMMKDKTDSVRVIAERWRLAVNAAGREPKRFVVVHVTPKSRPPPRVLGVKGTTTVNVPLPPAFDPLVDMDPRLVVSFLDLPRDADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLEHGTVYQGAVVVVPNVGASVTSSATNAWGGSGSMKGGGALAALKGNPWKKAVVQEPGWREDSWGDEEWATGSDNVQSSIWKKEAPPISASLNPWSVLDQESSSRSSVAAVKTDVSRKHSESSAVTKLEPHDGGSNLEGRHAVNLDALEASDVVDDWEQACE* | 1065 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr2g1598 | 1064 | MobiDBLite | consensus disorder prediction | 1014 | 1028 | - | - | |
Apr2g1598 | 1064 | CDD | NF-X1-zinc-finger | 606 | 655 | - | - | |
Apr2g1598 | 1064 | ProSiteProfiles | Zinc finger PHD-type profile. | 84 | 145 | IPR019787 | - | |
Apr2g1598 | 1064 | CDD | NF-X1-zinc-finger | 305 | 351 | - | - | |
Apr2g1598 | 1064 | CDD | NF-X1-zinc-finger | 459 | 502 | - | - | |
Apr2g1598 | 1064 | ProSiteProfiles | Zinc finger RING-type profile. | 87 | 143 | IPR001841 | - | |
Apr2g1598 | 1064 | CDD | NF-X1-zinc-finger | 176 | 234 | - | - | |
Apr2g1598 | 1064 | CDD | RING-CH-C4HC3_NFX1 | 86 | 143 | - | - | |
Apr2g1598 | 1064 | CDD | NF-X1-zinc-finger | 363 | 411 | - | - | |
Apr2g1598 | 1064 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Apr2g1598 | 1064 | SUPERFAMILY | RING/U-box | 86 | 146 | - | - | |
Apr2g1598 | 1064 | MobiDBLite | consensus disorder prediction | 19 | 47 | - | - | |
Apr2g1598 | 1064 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Apr2g1598 | 1064 | CDD | NF-X1-zinc-finger | 241 | 289 | - | - | |
Apr2g1598 | 1064 | MobiDBLite | consensus disorder prediction | 960 | 979 | - | - | |
Apr2g1598 | 1064 | MobiDBLite | consensus disorder prediction | 1009 | 1041 | - | - | |
Apr2g1598 | 1064 | SMART | znfxneu3 | 617 | 638 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | SMART | znfxneu3 | 579 | 608 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | SMART | znfxneu3 | 251 | 270 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | SMART | znfxneu3 | 315 | 334 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | SMART | znfxneu3 | 373 | 392 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | SMART | znfxneu3 | 196 | 214 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | SMART | znfxneu3 | 469 | 488 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | SMART | znfxneu3 | 526 | 544 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | Pfam | NF-X1 type zinc finger | 533 | 543 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | Pfam | NF-X1 type zinc finger | 315 | 332 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | Pfam | NF-X1 type zinc finger | 198 | 213 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | Pfam | NF-X1 type zinc finger | 431 | 442 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | Pfam | NF-X1 type zinc finger | 610 | 635 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | Pfam | NF-X1 type zinc finger | 579 | 594 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | Pfam | NF-X1 type zinc finger | 469 | 486 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | Pfam | NF-X1 type zinc finger | 251 | 269 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | Pfam | NF-X1 type zinc finger | 373 | 390 | IPR000967 | GO:0005634|GO:0008270 | |
Apr2g1598 | 1064 | PANTHER | NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 | 8 | 1061 | - | - | |
Apr2g1598 | 1064 | CDD | NF-X1-zinc-finger | 516 | 564 | - | - | |
Apr2g1598 | 1064 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 | 8 | 1061 | IPR034078 | GO:0003700 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr2g1598 | Apr-Chr2 | 21737610 | 21742850 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-X1 | Apr2g1598 | zf-NF-X1 | 1.3e+02 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr2g1598 | K12236 | - | gmx:106799700 | 1890.55 |