Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1598 ATGAGCTCGCAAGAGCGAAATCAACGAAGGGATAGGTCTAGGGTTTCTCGTCAGGAATGGATTCCTAGAGTGTCCACCGTCACCGCCGATCAGAGTCAGAATGGTGAAGCTGTTGGTAGCTCCAATCCAACTATTCGGCATAGAAGGAGTCGTCCTGTTCCTAAGAATCACGTGCACAAGGGATTGGTTTTGAAGGACTCTGATTTACCTCAGCTGCTGCAAGAGATTCAGGACAAGCTCACGAAAGGTGCTGTCGAATGCATGATTTGCTATGACATGGTTCGGAGGTCTGCACCTATCTGGTCATGTGCCAGTTGTTACTCTATCTTTCACCTTAATTGTATAAAGAAGTGGGCGCGAGCACCCACTTCTGTTGATTTGTCTGTAGAGAAGAATCAAGGGTTCAATTGGCGGTGCCCTGGTTGTCAGTCTGTGCAGCTCACATCATCCAAGGAGATTAGATACTTATGCTTCTGTGGAAAGAGGCCTGACCCGCCATCCGATTTGTATCTGACGCCACATTCCTGTGGAGAACCGTGTGGCAAGCCTCTTGAGAGGGAGCTTGGAGGGAACATGGAGGATCTTTGCCCTCATGTTTGTGTCTTGCAGTGTCATCCAGGCCCGTGTCCTCCTTGCAAAGCATTTGCGCCTCCACGTATGTGTCCTTGTGGGAAGAAAAATATTACCACTCGTTGCGCTGACCGGCAATCTGTTCTTACCTGTGGCCAGCCCTGTGAGAAGCTTCTTGAATGTGGGCGTCATCGGTGCGAACGAATTTGTCATCTGGGTCCTTGTGATCCTTGTCAGGTTCCAATCAATGCCTCTTGCTTTTGTAGTAAAAACATGGAGGTTATTCTTTGTGGAGAGATGGCTGTGAAGGGTGAAATCATAGCAGAAGGTGGAGTTTTTTCTTGTGGTTCCACTTGTGGAAAGAAACTTAGTTGTGGCAATCATATCTGTATTGAGAGTTGTCATCCAGGCAGCTGTGGGGAGTGTGACTTGTTACCATCCCATGTTAAGACATGCTATTGTGGGAAAACTAGATTGGAGGTGGAACGGCAGAGTTGTTTAGATCCTATACCTACCTGTTCACAAGTATGTGGGAGGTCCCTTCCTTGTGGGATTCATCATTGTAAAGAGGCATGTCATGCTGGGGAATGTTCTCCTTGTTTGGTTCTAGTCTCCCAGAAGTGTCGATGTGGCTCAACTTCCCGAACTGTGGAGTGCTGTAAGACAACAATGGAGAGTGAAAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAAATGTGGAAGGCACCGATGTAGTGAACGGTGTTGTCCCCTTTCTAATCCAAATAATATTCGAAATGTGGAATGGGATCCACACTTCTGTTCCATGCCATGTGGAAAGAAGTTAAGATGCGGGCAGCACGCATGTGAATCCCTGTGTCACACTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTAACATGTGCTTGTGGCCAGACTTCAATTCCTCCTCCATTGCCTTGTGGCACACCACCTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCTTGTTCCCATCCAGCCTCCCACAGCTGCCATTTTGGAGACTGCCCTCCTTGTTCAGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAGTTCTTAGGAACATACCATGTGGTTCAAAGGATATTAGATGCAATAAGCTCTGTGGGAAGACCAGACAATGTGGTTTACATGCCTGTGGCAGGACATGTCACCCCTCTCCTTGTGATAATCCATCTGCTGCACAAGGCACCCGAGCCTCTTGTGGGCAAACATGCGGCGCTCCTAGGAGAGACTGCCGGCATACATGTACAGCTCCTTGTCACCCATCAACTCCATGTCCGGATATAAGATGTGAATTCCCTGTCACAATTACTTGTTCTTGTGGCCGAATAACAGCAAATGTTCCTTGTGATGCTGGTGGCAGCTGTGCTAATTATAATGCTGATGCTGTACATGAAGCTTCCATTATTCAAAAGATGCCTGTACAGTTTCAACCAGTGGCTGCAAATGGCAAAAAAGTGCCCCTTGGACAAAGAAAACTGATGTGTAATGATGAGTGTGCTAAGTTAGAGCGTAAAAAGGTTCTTGCTGATGCTTTTGAGATAACCACTCCAAATATGGATTCTCTCCATTTTGGTGAGAATTCTGTTGCTTCTGAATTGATTGCTGACATGTTGAGACGTGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAGTTTTTAGTACTTGGCAAGAGCAGAGGGACTACACATGGTTTAAAAGTCCATGTTTTCTGTCCTATGATGAAGGACAAGACAGATTCTGTGAGGGTGATTGCTGAGAGATGGAGGCTTGCAGTGAATGCAGCTGGTCGGGAGCCAAAGCGCTTTGTAGTTGTTCATGTTACACCGAAGTCAAGACCTCCTCCTCGCGTGCTAGGGGTTAAGGGTACTACAACAGTAAATGTGCCTCTTCCTCCTGCTTTTGATCCTTTGGTAGACATGGATCCTCGACTTGTTGTCTCTTTTCTGGACTTACCAAGGGATGCAGATATTAGTGCGTTGGTGTTGAGGTTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCATTGGCTGTTTTTAATGACCCTGCCCGGGCTGCAACTGCAATGAGGAGGTTGGAGCATGGAACTGTTTATCAGGGAGCTGTTGTGGTTGTTCCAAATGTTGGGGCATCCGTAACATCTTCAGCTACCAATGCTTGGGGCGGATCTGGGTCAATGAAAGGAGGAGGAGCACTGGCAGCATTAAAGGGGAATCCGTGGAAAAAGGCTGTTGTTCAAGAGCCAGGTTGGAGAGAAGATTCTTGGGGTGATGAGGAGTGGGCTACTGGTTCTGATAATGTCCAATCATCCATTTGGAAGAAAGAAGCCCCACCAATATCTGCTTCATTAAATCCTTGGAGTGTCTTGGATCAAGAATCATCTTCAAGATCATCTGTTGCAGCCGTTAAAACTGATGTTTCTAGGAAACATTCTGAAAGCAGTGCTGTCACAAAGTTGGAGCCTCATGACGGTGGTTCAAATCTAGAAGGGCGGCATGCAGTAAACTTAGACGCATTAGAAGCTTCTGATGTAGTAGATGATTGGGAGCAGGCTTGTGAATAG 3195 0.4645 MSSQERNQRRDRSRVSRQEWIPRVSTVTADQSQNGEAVGSSNPTIRHRRSRPVPKNHVHKGLVLKDSDLPQLLQEIQDKLTKGAVECMICYDMVRRSAPIWSCASCYSIFHLNCIKKWARAPTSVDLSVEKNQGFNWRCPGCQSVQLTSSKEIRYLCFCGKRPDPPSDLYLTPHSCGEPCGKPLERELGGNMEDLCPHVCVLQCHPGPCPPCKAFAPPRMCPCGKKNITTRCADRQSVLTCGQPCEKLLECGRHRCERICHLGPCDPCQVPINASCFCSKNMEVILCGEMAVKGEIIAEGGVFSCGSTCGKKLSCGNHICIESCHPGSCGECDLLPSHVKTCYCGKTRLEVERQSCLDPIPTCSQVCGRSLPCGIHHCKEACHAGECSPCLVLVSQKCRCGSTSRTVECCKTTMESEKFTCEKPCGQKKKCGRHRCSERCCPLSNPNNIRNVEWDPHFCSMPCGKKLRCGQHACESLCHTGHCPPCLETIFTDLTCACGQTSIPPPLPCGTPPPSCQLPCSVPQPCSHPASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPSPCDNPSAAQGTRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDIRCEFPVTITCSCGRITANVPCDAGGSCANYNADAVHEASIIQKMPVQFQPVAANGKKVPLGQRKLMCNDECAKLERKKVLADAFEITTPNMDSLHFGENSVASELIADMLRRDPKWVLSVEERCKFLVLGKSRGTTHGLKVHVFCPMMKDKTDSVRVIAERWRLAVNAAGREPKRFVVVHVTPKSRPPPRVLGVKGTTTVNVPLPPAFDPLVDMDPRLVVSFLDLPRDADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLEHGTVYQGAVVVVPNVGASVTSSATNAWGGSGSMKGGGALAALKGNPWKKAVVQEPGWREDSWGDEEWATGSDNVQSSIWKKEAPPISASLNPWSVLDQESSSRSSVAAVKTDVSRKHSESSAVTKLEPHDGGSNLEGRHAVNLDALEASDVVDDWEQACE* 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1598 1064 MobiDBLite consensus disorder prediction 1014 1028 - -
Apr2g1598 1064 CDD NF-X1-zinc-finger 606 655 - -
Apr2g1598 1064 ProSiteProfiles Zinc finger PHD-type profile. 84 145 IPR019787 -
Apr2g1598 1064 CDD NF-X1-zinc-finger 305 351 - -
Apr2g1598 1064 CDD NF-X1-zinc-finger 459 502 - -
Apr2g1598 1064 ProSiteProfiles Zinc finger RING-type profile. 87 143 IPR001841 -
Apr2g1598 1064 CDD NF-X1-zinc-finger 176 234 - -
Apr2g1598 1064 CDD RING-CH-C4HC3_NFX1 86 143 - -
Apr2g1598 1064 CDD NF-X1-zinc-finger 363 411 - -
Apr2g1598 1064 MobiDBLite consensus disorder prediction 1 18 - -
Apr2g1598 1064 SUPERFAMILY RING/U-box 86 146 - -
Apr2g1598 1064 MobiDBLite consensus disorder prediction 19 47 - -
Apr2g1598 1064 MobiDBLite consensus disorder prediction 1 56 - -
Apr2g1598 1064 CDD NF-X1-zinc-finger 241 289 - -
Apr2g1598 1064 MobiDBLite consensus disorder prediction 960 979 - -
Apr2g1598 1064 MobiDBLite consensus disorder prediction 1009 1041 - -
Apr2g1598 1064 SMART znfxneu3 617 638 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 SMART znfxneu3 579 608 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 SMART znfxneu3 251 270 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 SMART znfxneu3 315 334 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 SMART znfxneu3 373 392 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 SMART znfxneu3 196 214 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 SMART znfxneu3 469 488 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 SMART znfxneu3 526 544 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 Pfam NF-X1 type zinc finger 533 543 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 Pfam NF-X1 type zinc finger 315 332 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 Pfam NF-X1 type zinc finger 198 213 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 Pfam NF-X1 type zinc finger 431 442 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 Pfam NF-X1 type zinc finger 610 635 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 Pfam NF-X1 type zinc finger 579 594 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 Pfam NF-X1 type zinc finger 469 486 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 Pfam NF-X1 type zinc finger 251 269 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 Pfam NF-X1 type zinc finger 373 390 IPR000967 GO:0005634|GO:0008270
Apr2g1598 1064 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 8 1061 - -
Apr2g1598 1064 CDD NF-X1-zinc-finger 516 564 - -
Apr2g1598 1064 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 8 1061 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1598 Apr-Chr2 21737610 21742850 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Apr2g1598 zf-NF-X1 1.3e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1598 K12236 - gmx:106799700 1890.55