Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1567 ATGGACCCAACTTGGATCTCTCCTCCGCCACCTCCGCCACCTCCGCCTGCTCCTCCGTCAATCTCCGCCAGCGTCCCCTTCACCCTGGAAGCAGACAATCACATGCCTCCCGTCGCCGACAACGCCAACGAAAACCCCAATCCGAACCATCCATCGTATGACGAGATGATACAGGCAGCAATAGGGGCATTGAAGGAGAAGGATGGGTCGAGCAAGAGAGCAATAGGGAAATACATAGAGCAAACATACAAAGACCTGCCACCAACTCACACAGCTCTGTTGACTCACCACCTCAACCGCTTAAAGGCAGAAGGGAACCTCGTTATGGTCAAAAAATCATACAAACTTCCTGGATCTCACCCCGACCAACCTTCCTCTCCCCAAACCCAGAGGCCCCGCGGTCGACCCCCCAAGCCCAAACTCCCAATCCAGCCCCAATCTCAGCCCACCGAACCAGTCTGGGCGGCTCTCGGCCTCTCCGACGACCCTGCAGCTCAATCCGCCAAAAGGGGCCCCGGTCGTCCTCGAAAAATTGGACCTCTGCCTGTGGGCTCCCCCGTCCCCGGCAGGAGAGGCCGCCCTCCTGGCTCTGGGAGATCTAAATTGCCCAAGAGGCCCGGCCGTCCTCCCAAGCCCAAATCCGTCTCCGCCTTCTCCAATGGGCTCAAGCGGCGTCCGGGCCGCCCGCCCAAAACCCAATCAAACCTGACCGTCATCCCCTTCGCCGCTCCTGTTCCTTCTGTGACTGCCAGCCTTCCCACAGTGCCGCCAGCTGTTCCATCTGCTTCAGTACCCAATGGGTCTCCCAGGCCCAGAGGGCGACCCAGGAAGAATGCCGCTGATGTGGGAGTTCCGGCACTGAATACCGTTGGTGTTGCACCCCGTGGTCGTGGCCGCGGACGGGGACGCAAGGTCTTGCCGGGGATGAGACAGGGTCCTCCTCAGAAGCTCGCCGTGGGAAGGCCCGTTGGCCGCCCTAAGGGAGCGACAGCTGCTATCACAGCACAAAAGGCTGCTAATGAAGAGCTTAGGATGAAACTTGAACACTTTCAATCAAAAGTGAAGGAATCTCTTGGTGTGCTTAAGCCTTATTTTAACCATGAGAGTCCAGTCACTGCAATTGCAGCAATCCAAGATTTGGAAGTACTGGCAACTTTGGACCTTAAAGCACCGTTGGGGGATGAAAGTCAGCAACTTCAGCAGTTCCCACAGCAGCTTCCACCACAGCAGCAGCTGCCACCTCAGCCATTGCCGCCACAGCAGCTGCCACAGACACAGATGTATGAACAGCAATATCCCCAGATATCTACTCAGCCTCAGCTGCAGCAATTTTTTCAACCACATACATCAGCCCCGAGCTAG 1362 0.5712 MDPTWISPPPPPPPPPAPPSISASVPFTLEADNHMPPVADNANENPNPNHPSYDEMIQAAIGALKEKDGSSKRAIGKYIEQTYKDLPPTHTALLTHHLNRLKAEGNLVMVKKSYKLPGSHPDQPSSPQTQRPRGRPPKPKLPIQPQSQPTEPVWAALGLSDDPAAQSAKRGPGRPRKIGPLPVGSPVPGRRGRPPGSGRSKLPKRPGRPPKPKSVSAFSNGLKRRPGRPPKTQSNLTVIPFAAPVPSVTASLPTVPPAVPSASVPNGSPRPRGRPRKNAADVGVPALNTVGVAPRGRGRGRGRKVLPGMRQGPPQKLAVGRPVGRPKGATAAITAQKAANEELRMKLEHFQSKVKESLGVLKPYFNHESPVTAIAAIQDLEVLATLDLKAPLGDESQQLQQFPQQLPPQQQLPPQPLPPQQLPQTQMYEQQYPQISTQPQLQQFFQPHTSAPS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1567 453 PANTHER HISTONE H1-LIKE 4 398 - -
Apr2g1567 453 MobiDBLite consensus disorder prediction 407 421 - -
Apr2g1567 453 MobiDBLite consensus disorder prediction 113 329 - -
Apr2g1567 453 MobiDBLite consensus disorder prediction 250 264 - -
Apr2g1567 453 MobiDBLite consensus disorder prediction 394 433 - -
Apr2g1567 453 SUPERFAMILY "Winged helix" DNA-binding domain 46 125 IPR036390 -
Apr2g1567 453 CDD H15 48 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr2g1567 453 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 49 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr2g1567 453 Coils Coil 333 353 - -
Apr2g1567 453 SMART h15plus2 47 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr2g1567 453 SMART AT_hook_2 294 306 IPR017956 GO:0003677
Apr2g1567 453 SMART AT_hook_2 223 235 IPR017956 GO:0003677
Apr2g1567 453 SMART AT_hook_2 130 142 IPR017956 GO:0003677
Apr2g1567 453 SMART AT_hook_2 320 332 IPR017956 GO:0003677
Apr2g1567 453 SMART AT_hook_2 269 281 IPR017956 GO:0003677
Apr2g1567 453 SMART AT_hook_2 169 181 IPR017956 GO:0003677
Apr2g1567 453 SMART AT_hook_2 188 200 IPR017956 GO:0003677
Apr2g1567 453 MobiDBLite consensus disorder prediction 130 146 - -
Apr2g1567 453 Gene3D - 46 127 IPR036388 -
Apr2g1567 453 PANTHER HISTONE H1 4 398 - -
Apr2g1567 453 MobiDBLite consensus disorder prediction 1 22 - -
Apr2g1567 453 MobiDBLite consensus disorder prediction 1 54 - -
Apr2g1567 453 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Apr2g1567 453 PRINTS AT-hook-like domain signature 167 178 IPR017956 GO:0003677
Apr2g1567 453 PRINTS AT-hook-like domain signature 267 277 IPR017956 GO:0003677
Apr2g1567 453 Pfam linker histone H1 and H5 family 50 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1567 Apr-Chr2 21517158 21521492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1567 45 121 Single Myb Histone (SMH) Gene Family AT1G49950 43.038 2.88e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1567 - - aprc:113856313 666.766