Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1566 ATGGACCCAACTTGGATCTCTCCTCCCCCTCCTCCTCCTCCGGCGATTCCCACCAGCGTTCCCTTCACCGTGGAACCAAACAATCACATGCCCTCCGTCGCTGACAACGTCAACGAAAATCCCAACCCGAACCCCAACCACCCACCTTACGAAGAGATGATACAGGCAGCAATAGGGGCATTGAAGGAGAAGGATGGGTCGAGCAAGAGAGCAATAGGGAAATACATAGAGCAAACATACAAAGACCTGCCACCAACTCACACAGCTCTGTTGACTCACCACCTCAACCGCTTAAAGGCAGAAGGGAACCTCGTTATGGTCAAAAAATCATACAAACTTCCTGGATCTCACCCCGACCAACCTTCCTCTCCCCAAACCCAGAGGCCCCGCGGTCGACCCCCCAAGCCCAAACTCCCAATCCAGCCCCAATCTCAGCCCACCGAACCAGTCTGGGCGGCTCTCGGCCTCTCCGACGACCCTGCAGCTCAATCCGCCAAAAGGGGCCCCGGTCGTCCTCGAAAAATTGGACCTCTGCCTGTGGGCTCCCCCGTCCCCGGCAGGAGAGGCCGCCCTCCTGGCTCTGGGAGATCTAAATTGCCCAAGAGGCCCGGCCGTCCTCCCAAGCCCAAATCCGTCTCCGCCTTCTCCAATGGGCTCAAGCGGCGTCCGGGCCGCCCGCCCAAAACCCAATCAAACCTGACCGTCATCCCCTTCGCCGCTCCTGTTCCTTCTGTGACTGCCAGCCTTCCCACAGTGCCGCCAGCTGTTCCATCTGCTTCAGTACCCAATGGGTCTCCCAGGCCCAGAGGGCGACCCAGGAAGAATGCCGCTGATGTGGGAGTTCCGGCACTGAATACCGTTGGTGTTGCACCCCGTGGTCGTGGCCGCGGACGGGGACGCAAGGTCTTGCCGGGGATGAGACAGGGTCCTCCTCAGAAGCTCGCCGTGGGAAGGCCCAAGAACCCTGCAGGAAGGCCCGTTGGACGCCCAAAGGGAGCGACAGCTGCTATCACTGTACAAAAGGCTGCTAATGAAGAGATAAGGCGGAAACTCGAACACTTTCAATCCAAAGTGAAGGAATCTCTTGGTGTGCTTAAGCCTTATTTTAACCATGAGAGTCCAGTCACTGCAATTGCAGCAATCCAAGATTTGGAAGTACTGGCAACTTTGGACCTTAAAGCACCATTGGGGGATGAAAGTCAGCAACTTCAGCAGTTCCCACAGCAGCTTCCACCACAGCAGCAGCAATTGGCGCCTCAGCAATTGCCGCCACAGCAGCTGCCACAGACACAGATGTACGAACAGCAATATCCCCAGATATCTACTCAGCCTCAGCTGCAGCAATTTTTTCAACCACATACATCAGCCCCGAGCTAG 1377 0.5679 MDPTWISPPPPPPPAIPTSVPFTVEPNNHMPSVADNVNENPNPNPNHPPYEEMIQAAIGALKEKDGSSKRAIGKYIEQTYKDLPPTHTALLTHHLNRLKAEGNLVMVKKSYKLPGSHPDQPSSPQTQRPRGRPPKPKLPIQPQSQPTEPVWAALGLSDDPAAQSAKRGPGRPRKIGPLPVGSPVPGRRGRPPGSGRSKLPKRPGRPPKPKSVSAFSNGLKRRPGRPPKTQSNLTVIPFAAPVPSVTASLPTVPPAVPSASVPNGSPRPRGRPRKNAADVGVPALNTVGVAPRGRGRGRGRKVLPGMRQGPPQKLAVGRPKNPAGRPVGRPKGATAAITVQKAANEEIRRKLEHFQSKVKESLGVLKPYFNHESPVTAIAAIQDLEVLATLDLKAPLGDESQQLQQFPQQLPPQQQQLAPQQLPPQQLPQTQMYEQQYPQISTQPQLQQFFQPHTSAPS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1566 458 MobiDBLite consensus disorder prediction 111 333 - -
Apr2g1566 458 SUPERFAMILY "Winged helix" DNA-binding domain 41 119 IPR036390 -
Apr2g1566 458 MobiDBLite consensus disorder prediction 1 20 - -
Apr2g1566 458 PANTHER HISTONE H1 21 402 - -
Apr2g1566 458 MobiDBLite consensus disorder prediction 127 143 - -
Apr2g1566 458 MobiDBLite consensus disorder prediction 1 50 - -
Apr2g1566 458 PANTHER HISTONE H1-LIKE 21 402 - -
Apr2g1566 458 SMART h15plus2 44 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr2g1566 458 MobiDBLite consensus disorder prediction 247 261 - -
Apr2g1566 458 SMART AT_hook_2 266 278 IPR017956 GO:0003677
Apr2g1566 458 SMART AT_hook_2 166 178 IPR017956 GO:0003677
Apr2g1566 458 SMART AT_hook_2 291 303 IPR017956 GO:0003677
Apr2g1566 458 SMART AT_hook_2 220 232 IPR017956 GO:0003677
Apr2g1566 458 SMART AT_hook_2 185 197 IPR017956 GO:0003677
Apr2g1566 458 SMART AT_hook_2 127 139 IPR017956 GO:0003677
Apr2g1566 458 SMART AT_hook_2 324 336 IPR017956 GO:0003677
Apr2g1566 458 Gene3D - 43 124 IPR036388 -
Apr2g1566 458 Pfam linker histone H1 and H5 family 47 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr2g1566 458 MobiDBLite consensus disorder prediction 21 41 - -
Apr2g1566 458 PRINTS AT-hook-like domain signature 127 137 IPR017956 GO:0003677
Apr2g1566 458 PRINTS AT-hook-like domain signature 164 175 IPR017956 GO:0003677
Apr2g1566 458 PRINTS AT-hook-like domain signature 264 274 IPR017956 GO:0003677
Apr2g1566 458 CDD H15 50 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr2g1566 458 MobiDBLite consensus disorder prediction 398 438 - -
Apr2g1566 458 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 46 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1566 Apr-Chr2 21506182 21510076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1566 37 118 Single Myb Histone (SMH) Gene Family AT1G49950 40.244 6.95e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1566 - - aprc:113856313 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1566 2 21506182 21510076 Apr2g1566 2 21506182 21510076 ECH