Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1565 ATGGACCCAACTTGGATCTCTCCTCCACCTCCTGCTCCGCCTGCTCCTCCGGCGATCTCTGCCAGCGTCCCCTTCACCCTCGAAGCAAACAATCACATGCCCCCCCTGGCCGACAACGCCACCGAAAACCCCAACCCCAACCATCCATCGTATGACGAGATGATACACGCAGCATTAGGGGCCCTGAAAGAGAAGGATGGGTCGAGCAAGAGAGCAATAGGAAAATACATAGAGCAAACATACAAAGACCTTCCACCCACTCACTCAGCTTTGTTGACTCACCACCTCAACCGCTTGAAGGCTTCTGGACACCTCGTTATGGTCAAAAAATCATACAAACTTCCTGGATCTCATCCCTCCCAACCTTCTTCTCCCCAAACTCAAAGGCCACGCGGTCGACCCCCCAAGCCCAAACTCCCAACCCAGCCCCAATCCCAGCCCACCGAACCAGTCTGGGCCGCCCTAGGCCTTTCCGACGACCCTGCAGCTCAATCCGCCAAAAGAGGCCCTGGTCGTCCTCGAAAAATTGGAGCTCTGCCTGTGGGCTCTCCCGTCCCTGGCAGGAGAGGCCGCCCTCCTGGCTCTGGGAGATCTAAGTTGCCCAAGAGGCCCGGCCGTCCTCCCAAGCCCAAATCCGTCTCCGCCTTCTCCAGTGGGCTCAAGCGGCGTCCAGGCCGCCCGCCCAAAATCCAGTCAAACCTAACCGTCATCCCCTTCGCTGCTCCTGTTTCTTCTGTCACCGCCGGCCTCCCCACAGTACCGCCAGCTATTCCATCTGCTTCTGTACCCAATGGGTCTCCCAGACCCAGAGGGCGACCCAGGAAGAATGCTGCTGTTGTCGGAGTTATGTCACTGAGTACTGTCGGTGCTGCACCCCGCGGTCGCGGCCGCGGCCGCGGACGTGGACGCAAGGTCTTGCCGGTGATGAGGCAGGGCCGTCCTCCGAAGCTTGCTGTGGGAAGGCCGGTGGGCCGCCCTAAGGGAGCAACAGATGCTATCACAGCACAGAAGGCTGCTAATGAAGAGCTAAGGGGGAAACTTGAACACTTTCAATCTAAAGTGAAGGAATCTCTTGGTGTGCTTAAGCCTTATTTTAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATTCAAGATTTGGAAGTACTGGCAACTATGGACCTTAAAGCACCATTAGCTGATGAAACTCAGCAACTTCAGCAGTCCCCACAGCAAATGCCACAGCCACAGATGTATGAACAGCAATATCCCCAGATATCTACTCAGCCACAGCTACAGCAATTTTTCCAACCACATACATCAGCCCTGAGCTAG 1314 0.5594 MDPTWISPPPPAPPAPPAISASVPFTLEANNHMPPLADNATENPNPNHPSYDEMIHAALGALKEKDGSSKRAIGKYIEQTYKDLPPTHSALLTHHLNRLKASGHLVMVKKSYKLPGSHPSQPSSPQTQRPRGRPPKPKLPTQPQSQPTEPVWAALGLSDDPAAQSAKRGPGRPRKIGALPVGSPVPGRRGRPPGSGRSKLPKRPGRPPKPKSVSAFSSGLKRRPGRPPKIQSNLTVIPFAAPVSSVTAGLPTVPPAIPSASVPNGSPRPRGRPRKNAAVVGVMSLSTVGAAPRGRGRGRGRGRKVLPVMRQGRPPKLAVGRPVGRPKGATDAITAQKAANEELRGKLEHFQSKVKESLGVLKPYFNHESPVTAIAAIQDLEVLATMDLKAPLADETQQLQQSPQQMPQPQMYEQQYPQISTQPQLQQFFQPHTSALS* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1565 437 CDD H15 46 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr2g1565 437 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 47 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr2g1565 437 MobiDBLite consensus disorder prediction 1 52 - -
Apr2g1565 437 MobiDBLite consensus disorder prediction 1 20 - -
Apr2g1565 437 MobiDBLite consensus disorder prediction 128 144 - -
Apr2g1565 437 MobiDBLite consensus disorder prediction 254 275 - -
Apr2g1565 437 PRINTS AT-hook-like domain signature 128 138 IPR017956 GO:0003677
Apr2g1565 437 PRINTS AT-hook-like domain signature 165 176 IPR017956 GO:0003677
Apr2g1565 437 PRINTS AT-hook-like domain signature 265 275 IPR017956 GO:0003677
Apr2g1565 437 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Apr2g1565 437 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Apr2g1565 437 SMART AT_hook_2 221 233 IPR017956 GO:0003677
Apr2g1565 437 SMART AT_hook_2 320 332 IPR017956 GO:0003677
Apr2g1565 437 SMART AT_hook_2 294 306 IPR017956 GO:0003677
Apr2g1565 437 SMART AT_hook_2 167 179 IPR017956 GO:0003677
Apr2g1565 437 SMART AT_hook_2 267 279 IPR017956 GO:0003677
Apr2g1565 437 MobiDBLite consensus disorder prediction 113 234 - -
Apr2g1565 437 Pfam linker histone H1 and H5 family 48 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr2g1565 437 PANTHER HISTONE H1-LIKE 1 400 - -
Apr2g1565 437 Gene3D - 44 125 IPR036388 -
Apr2g1565 437 SUPERFAMILY "Winged helix" DNA-binding domain 44 123 IPR036390 -
Apr2g1565 437 SMART h15plus2 45 111 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr2g1565 437 PANTHER HISTONE H1 1 400 - -
Apr2g1565 437 MobiDBLite consensus disorder prediction 395 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1565 Apr-Chr2 21500251 21504012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1565 40 119 Single Myb Histone (SMH) Gene Family AT1G49950 40.244 9.88e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1565 - - aprc:113856313 611.683