Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1550 ATGGCTCTAAACTCAGGTTTACCTACTTCTCTAGTTACAGAGAGAAGAGAAGAGGGGCTTCGTTCTGGTTTTGCTTCTGCTTCTGCTTCTGAGACTCACGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGAAGGGGAAGCGCACATTAACAATGATTCGCGTCCAGTTCCCCACGCTCCAAAAAAGAAAGTCTCCCACTGGACAGAGGAGGAACACAGGTTATTTCTTCAAGGGTTGAAGAGATTTGGCAAAGGAGATTGGAAGAGTATTTCGCGGTATTCTGTTGTGTCAAAAACTTCTGCTCAAGTTGCTAGTCACGCTCAAAAATATTTTCTCCGCCATAACAATCAGAAAAAAAGAAAAAGTATCCATGACATAACCACAGATAATGACTCCATCTCAGTTCCACCTTCAGAGATTGACTTGGTTTCAAATTATGTCAACCCAAACAATAATTTGGTTTCAAATTATGTCAATTTAGACAATAACTTTGTTCCAAGTTATGTCAACCCAGACAATAACTTTGTTCCAAATTATGTCGACTTTGACTTGGTTACAAATTATACCAGCGCAAATAGTGACTTGGTTCCAAATTATGTCAACCCAAACAATGACTTGGTTCCAAATTATGTTAACCCAAACAATGACTTGGTTCCAAATTATGTCAACCCAAACAATGACTTGGTTCCAAATTATGTCAACCCAAACAGTGACTTGGTTCCAAATTATGTCAATCCAAACAGTAACTTGGTTCCAAATTATACCAACACAAATAGTGACTTGGTTCCAAATTATGTCAATCCAAACAATGACTTGGTTCCAAATTATGTCAATCCAAACACTAACTTGGTTCCAAATTATGTCAACCCAAACAGTGACTTGGTTCTCCAACATGTTAACCACTATAATGTTCCATCATTTAACCATGAGTTAGTCCAACAACAGCACAATCCAATTGGCCAACCACATCAAATCATCGCAACCCAACACGATTTGCAACCTTTCCCTGAGCATATTGACTTCTCTCATTCACTTCCTCTCTCAAATTCTCAAATACTGCAATTGTTTAACCTCCTCGATTACAATGATTGGAATGACTTTGTACTTCATCTTCAACTGCGGCAATTTCCTCACTTGGTTCACCATCATGATTGGATTGCTCCACCCCACCGTTAA 1176 0.3912 MALNSGLPTSLVTERREEGLRSGFASASASETHVAVAVAVAVAEGEAHINNDSRPVPHAPKKKVSHWTEEEHRLFLQGLKRFGKGDWKSISRYSVVSKTSAQVASHAQKYFLRHNNQKKRKSIHDITTDNDSISVPPSEIDLVSNYVNPNNNLVSNYVNLDNNFVPSYVNPDNNFVPNYVDFDLVTNYTSANSDLVPNYVNPNNDLVPNYVNPNNDLVPNYVNPNNDLVPNYVNPNSDLVPNYVNPNSNLVPNYTNTNSDLVPNYVNPNNDLVPNYVNPNTNLVPNYVNPNSDLVLQHVNHYNVPSFNHELVQQQHNPIGQPHQIIATQHDLQPFPEHIDFSHSLPLSNSQILQLFNLLDYNDWNDFVLHLQLRQFPHLVHHHDWIAPPHR* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1550 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 115 IPR017930 -
Apr2g1550 391 PANTHER TRANSCRIPTION FACTOR KUA1 48 259 - -
Apr2g1550 391 Gene3D - 65 116 - -
Apr2g1550 391 ProSiteProfiles SANT domain profile. 67 115 IPR017884 -
Apr2g1550 391 SUPERFAMILY Homeodomain-like 60 116 IPR009057 -
Apr2g1550 391 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Apr2g1550 391 ProSiteProfiles Myb-like domain profile. 59 111 IPR001005 -
Apr2g1550 391 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 62 113 IPR006447 GO:0003677
Apr2g1550 391 CDD SANT 67 111 IPR001005 -
Apr2g1550 391 SMART sant 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1550 Apr-Chr2 21381069 21382512 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr2g1550 Myb_DNA-binding 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1550 - - aprc:113855820 773.467