Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1542 ATGGATATTGAGGAGGACATCCGTTCTTTACAGCTTGACTCGGCAGAAGACAATAATGGGGTGGTAAATGCAGAGGATGGAAAGCCAGAAGTTGAGAAATCTGATAAGATGGATGAAGATCCGAAGCGGGATGTTCAGGCACCGGTTGTTGAGGCTGAGCCAAAAGGGAAATATAAGGAAATTCCTTCTGTTCAAGATGAAGATGAGTTGGAGATGAAGAAAAGACACTTAAATGTTGTATTTATTGGCCACGTTGATGCTGGTAAGTCTACAACTGGAGGCCAAATACTTTTCCTCAGTGGTCAAGTTGATGACCGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGACAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAAACAGTTGAAGTCGGTAGAGCACACTTTGAGACAGAAACAACAAGGTTTACCATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCTAACATGATTAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAACTTGCAAAAACGCTGGGTGTGGCCAAGTTGCTTGTTGTTGTCAATAAAATGGATGATCCTACGGTGCAGTGGTCAAAAGAAAGGTATGATGAAATCGAGTCAAAGATGGTTCCATTTCTAAAGCAATCAAGATACAATGTAAAGAAAGATGTCTTGTTTTTGCCAATATCTGGGTTGATTGGTACAAACATAAAAACAAAAGTGGATAAAAGCACTTGTCCATGGTGGAGTGGGCCTTGCTTATTCGAGGCCCTTGATACTGTTGAAGTTCCTCCACGAGATCCCAAAGGTCCTTTTAGGATGCCTATTATTGACAGATTCAAAGACATGGGAACAGTTGTTATGGGCAAAGTTGAATCTGGTACTGTTCGTGAGGGAGATTCCATGTGTGTCATGCCAAATAAGGATCAAGTAAAAGTTGTTGCGGTATTTATCGATGAAAATAGGGTTAAACGTGCCGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGACATATTATCTGGTTTCGTCTTGTCTAGTGTTGTTAATCCAATACCGGCAGTTACTGAGTTTGTTGCTCAGTTGATTATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTCTTGCACGAAATTGATACAAAGACACAAAAACCTATTAAAAAAAAGGTTCTCTTTGTGAAGAATAATGCATCAGTAGTGTGTCGTGTTCAGGTTAATAATGCGATTTGTATTGAGAAGTTCTCTGATTTCCCTCAACTTGGGAGGTTCACTCTTCGCACAGAAGGAAAAACTGTTGCTGTGGGAAAAGTCACCGGTCTCTAA 1503 0.4112 MDIEEDIRSLQLDSAEDNNGVVNAEDGKPEVEKSDKMDEDPKRDVQAPVVEAEPKGKYKEIPSVQDEDELEMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRDSWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDPTVQWSKERYDEIESKMVPFLKQSRYNVKKDVLFLPISGLIGTNIKTKVDKSTCPWWSGPCLFEALDTVEVPPRDPKGPFRMPIIDRFKDMGTVVMGKVESGTVREGDSMCVMPNKDQVKVVAVFIDENRVKRAGPGENLRIRLSGVEEEDILSGFVLSSVVNPIPAVTEFVAQLIILELLDNAIFTAGYKAVLHIHSVVEECEIVELLHEIDTKTQKPIKKKVLFVKNNASVVCRVQVNNAICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1542 500 Pfam Elongation factor Tu GTP binding domain 74 287 IPR000795 GO:0003924|GO:0005525
Apr2g1542 500 PRINTS GTP-binding elongation factor signature 78 91 IPR000795 GO:0003924|GO:0005525
Apr2g1542 500 PRINTS GTP-binding elongation factor signature 157 167 IPR000795 GO:0003924|GO:0005525
Apr2g1542 500 PRINTS GTP-binding elongation factor signature 173 184 IPR000795 GO:0003924|GO:0005525
Apr2g1542 500 PRINTS GTP-binding elongation factor signature 217 226 IPR000795 GO:0003924|GO:0005525
Apr2g1542 500 PANTHER TRANSLATION FACTOR 67 494 - -
Apr2g1542 500 MobiDBLite consensus disorder prediction 26 53 - -
Apr2g1542 500 Gene3D Translation factors 303 387 - -
Apr2g1542 500 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 74 300 IPR000795 GO:0003924|GO:0005525
Apr2g1542 500 CDD EF1_alpha 78 299 - -
Apr2g1542 500 PANTHER BNAA06G12300D PROTEIN 67 494 - -
Apr2g1542 500 Pfam Elongation factor Tu domain 2 318 384 IPR004161 GO:0005525
Apr2g1542 500 CDD eRF3_C_III 392 500 - -
Apr2g1542 500 Pfam Elongation factor Tu C-terminal domain 391 499 IPR004160 -
Apr2g1542 500 SUPERFAMILY Translation proteins 297 390 IPR009000 -
Apr2g1542 500 Gene3D Translation factors 393 500 - -
Apr2g1542 500 MobiDBLite consensus disorder prediction 1 53 - -
Apr2g1542 500 Gene3D - 58 298 IPR027417 -
Apr2g1542 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 309 IPR027417 -
Apr2g1542 500 CDD eRF3_II 305 386 - -
Apr2g1542 500 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 130 145 IPR031157 -
Apr2g1542 500 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 394 499 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1542 Apr-Chr2 21321893 21333292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1542 74 495 Eukaryotic Initiation Factors Gene Family AT5G60390 38.028 2.99e-94 291