Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1530 ATGCCTGTTGTCACAGACACAACAGCAGCAACAACAACAGCAGCAGAACACATCAAGTGGAGAAGACCCAGAAATCAATTCAGCTATCACCACCACCACCCCCACCCCATTTCAGAAACAGATCTAAACCCACAAATCCCTTCTATAATCCAATCCACTCGCTGCAAGTCCACCATTTCTTCCCTGCTCCTCTCCACATTCTCCAACACCTCCTCTCCCTCCAATGAGACCCACACCATCAATGGCAGGAAAAAAACCAACTTTTCTGCAGCAACCTTCAGAGGGTTGGGCTGCACCGCCGGGGCGTCGCAGCAAGTGTCGGTGCCAGCGGTGATTCGCACCTCCGCTGATTGGCAAGGGAAGAAAACCAGAAAAAAGAAGCACAAGAGGAACAGTAGCAGTAACAAGAACAAGGCTTGCCATGGTGGAGGTCTAGAAGGTTCCAATCCTGGTTGTGTTGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAGCAGATGCTGCTGCCTCTGTTGATTGTGTTGTGGCTAGGAAGAATGTGTCTTCAAGAGGCAAAATTGATGTGGAGAAGATCTCTCACAGGGAGCGTTCATCGTACATGGGAAGGCGCACAGAAACCTTCACTTTTCTGGACAACACTGACCCTGACATTTTCACACCACGCTCTGCCTCAAACACTTTTGGAACCTCAACATACTATCGTCACGTTACAGATTCTTCCTCTGATGGCTTTGCCGAGATAATGATGCTTCAAGGGAGTCTTCTAATGGGGGGACGATTAAATTCACATGATCAATTCAGAGACTGGAGGCTTGATGTTGATAACATGTCATATGAGCAATTGCTGGAGCTTGGTGAGAGAATTGGTTATGTTAGCACTGGACTGAAAGAAGATGAGATGGGGCGGAACATAAGGAAAATTTTGCTTCAGTTTTCTTGTGATCTAACAAAGAATCGTATAGATAAAAAGTGCAGCATTTGCCAGGAGGAGTATGAAGGAGGTGACGAGGTGGGGAAGCTAAATTGTGAACACAGCTATCACTTCCAGTGTATAAAACAATGGGTTGCACACAAAAATTTCTGTCCAGTGTGTAAGCAACAAGTTGTGGCTCGTCGCTGA 1128 0.4663 MPVVTDTTAATTTAAEHIKWRRPRNQFSYHHHHPHPISETDLNPQIPSIIQSTRCKSTISSLLLSTFSNTSSPSNETHTINGRKKTNFSAATFRGLGCTAGASQQVSVPAVIRTSADWQGKKTRKKKHKRNSSSNKNKACHGGGLEGSNPGCVDFQDVWCGPGIGFSADAAASVDCVVARKNVSSRGKIDVEKISHRERSSYMGRRTETFTFLDNTDPDIFTPRSASNTFGTSTYYRHVTDSSSDGFAEIMMLQGSLLMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGYVSTGLKEDEMGRNIRKILLQFSCDLTKNRIDKKCSICQEEYEGGDEVGKLNCEHSYHFQCIKQWVAHKNFCPVCKQQVVARR* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1530 375 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Apr2g1530 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 373 IPR013083 -
Apr2g1530 375 MobiDBLite consensus disorder prediction 120 135 - -
Apr2g1530 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 9 374 IPR045191 GO:0061630
Apr2g1530 375 SUPERFAMILY RING/U-box 326 372 - -
Apr2g1530 375 MobiDBLite consensus disorder prediction 117 143 - -
Apr2g1530 375 SMART ring_2 327 367 IPR001841 -
Apr2g1530 375 Pfam Ring finger domain 326 368 IPR001841 -
Apr2g1530 375 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 9 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1530 Apr-Chr2 21207027 21211102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1530 1 282 C3H Transcription Factor Family AT1G73760 40.132 1.80e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1530 - - gmx:100788837 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1032 6 15049561 15053852 Apr2g1530 2 21207027 21211102 ECH
Apr2g1530 2 21207027 21211102 Apr2g1530 2 21207027 21211102 ECH