Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1470 ATGACCACCCCTTCTTCCTTCCTCGTATTAATCACCCTTGTTCTCTTCTTAACAACTTTGCCACAATCCTACTCTCAGAAAAACGACAGCTTCTCTATTTGCAGCCAATCATTCAGTTGTGGTACTCTCACAAACGTTTCCTATCCTTTCTGGGGAGGGAACCGACCCAAGTTTTGTGGCATCGATGGGTTCAAGATCACCTGCATGCAGAACCAAAACACTTCGATCCAAGTTGGTTCCCAAAAGTTCCATGTACTAAATATTAACCAAAACGCATCTACCATGAGAATGGTGCGAACAGACTTTGTCTATGATCGTTGCTCTTCCAATTTCACCAACACTTCTCTGAATGCTAGTCCGTTTAGTTTTCTCCCCACCGTTCAGAATGTCTCTATATTCTACAACTGCTCCTCTGAGAATTCAATAGTGGGAAACACTTTTACGTGCCAGAATGGTAGCAAAAAGCATGCTTTCTATGTGGTGAATGGAACTCAGGTGAAGCAGTTTCCGGGTCTTCAGAACTGTGGGGTTCGTATTCAAGTGCAAGTTTCACACGATGCTGTTTTGGACTCTGAGGGTGGTGTTGTGGCGTTGAAGAAAGCACTAGATGAAGGGTTTGATGTGCGGTATGATGCAAAGTGGAGTTCTGAGTGTACTGCATGCAAGGAATCTGGAGGAGCATGTGGAAGGAATGAGAATGATTCGGCTCAGTTTTCCTGTTATTGCTCGGGTGGAACTTACGATTCAGTGTGCTCTACTCATAAAAATCGAAGGAAGAACAAAGTGTTGAAGCTGGTTTTAGGTTTCGTAGCCACTGGATTTGGACTACCTCTAATCGCTGTCATCATATGCCGAAATAAAGCTAAGGTGTGGAAGTTTATATCAACAAGATTCAGTAAGAGAAAAAGGAATGATAGAGACATAGAAGCCTTCCTTGAAACTCAAGGTTCTCTGGGTCTAAAAAGATATAGTTTCTCTGATGTCAAGAAGATGACGGATTCCTTCAAAGTTAAAATAGGAGAAGGTGGTTATGGTTCCGTATACAAAGGAAAAATACTCAATGGCTGCTGTGTTGCCGTGAAGGTACTGAATGAGTCAAAAGACAATGGCGAAGAATTTATCAATGAGGTTGCCAGCATAAGCAAAACATCCCATGTTAACATTGTCACTCTTCTTGGGTTTTGTCTAGATGGAAGCAGAAAAGCTCTCATCTATGAATTCATGTCCAATGGTTCGCTTGAAAAGTACATTAAAAACAAAGAAGCTGAAACCACTACTCAATCCTTGAGTTGGGAGAGATTGTACCAGATTGCAATAGGCATAGCTAAAGGGCTTGAATACTTGCATAAAGGATGCAACACTCGGATTCTTCATTTTGACATTAAACCACATAACATCCTTTTGGATGAAACTTATCGTCCAAAGATATCAGATTTTGGGCTAGCTAAGCTCAGCGCAAGGGATGAGAGCATAATTTCAATGTCAAATGCTAGAGGGACAATTGGGTATGTAGCTCCTGAAGTGTGGAATAAAAGTTTTGGAGGTGTTTCTCATAAGTCTGATGTATATAGCTATGGAATGATGCTTCTAGAAATGGTTGGAGGAATGAAGAACATCAACGTTGAAGCTAGTCGCTCGAGTGAGATTTATTTCCCACATTTGGTGATTTATAAGAAGCTTGAGCAGGAAAGTGGTTTGGGACTTGATGGGGTTGTGTCCACAGAGGAAAATGAGATAGCAAAGAGAATGACTATGGTGGGTCTTTGGTGCATTCAGACAATTCCTTCTCATAGACCTACCATAACTAGAGTGATTGAAATGTTGGAAGGTAGCTTGGACAAATTGGAAATGCCACCAAAACCAGACCTGTCTTCTTCTCCAATATCAACAACAGAATCTTCCACTGCATCAAAATCACTGAATAGTGTCTAG 1932 0.413 MTTPSSFLVLITLVLFLTTLPQSYSQKNDSFSICSQSFSCGTLTNVSYPFWGGNRPKFCGIDGFKITCMQNQNTSIQVGSQKFHVLNINQNASTMRMVRTDFVYDRCSSNFTNTSLNASPFSFLPTVQNVSIFYNCSSENSIVGNTFTCQNGSKKHAFYVVNGTQVKQFPGLQNCGVRIQVQVSHDAVLDSEGGVVALKKALDEGFDVRYDAKWSSECTACKESGGACGRNENDSAQFSCYCSGGTYDSVCSTHKNRRKNKVLKLVLGFVATGFGLPLIAVIICRNKAKVWKFISTRFSKRKRNDRDIEAFLETQGSLGLKRYSFSDVKKMTDSFKVKIGEGGYGSVYKGKILNGCCVAVKVLNESKDNGEEFINEVASISKTSHVNIVTLLGFCLDGSRKALIYEFMSNGSLEKYIKNKEAETTTQSLSWERLYQIAIGIAKGLEYLHKGCNTRILHFDIKPHNILLDETYRPKISDFGLAKLSARDESIISMSNARGTIGYVAPEVWNKSFGGVSHKSDVYSYGMMLLEMVGGMKNINVEASRSSEIYFPHLVIYKKLEQESGLGLDGVVSTEENEIAKRMTMVGLWCIQTIPSHRPTITRVIEMLEGSLDKLEMPPKPDLSSSPISTTESSTASKSLNSV* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1470 643 Gene3D Phosphorylase Kinase; domain 1 308 407 - -
Apr2g1470 643 SMART serkin_6 333 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1470 643 MobiDBLite consensus disorder prediction 623 643 - -
Apr2g1470 643 ProSiteProfiles Protein kinase domain profile. 333 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1470 643 Gene3D Transferase(Phosphotransferase) domain 1 408 620 - -
Apr2g1470 643 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 1 643 - -
Apr2g1470 643 MobiDBLite consensus disorder prediction 615 643 - -
Apr2g1470 643 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 643 IPR045874 GO:0004672
Apr2g1470 643 Pfam Protein kinase domain 336 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1470 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Apr2g1470 643 SUPERFAMILY Protein kinase-like (PK-like) 314 609 IPR011009 -
Apr2g1470 643 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Apr2g1470 643 Pfam Wall-associated receptor kinase C-terminal 149 244 IPR032872 -
Apr2g1470 643 Pfam Wall-associated receptor kinase galacturonan-binding 34 99 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1470 Apr-Chr2 20730589 20736938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1470 12 640 Receptor kinase-like Gene Family AT5G38260 40.185 7.35e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Apr2g1470 Pkinase 6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1470 - - gmx:100816285 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1470 2 20730589 20736938 Apr2g1470 2 20730589 20736938 ECH
Apr6g1046 6 15154372 15158102 Apr2g1470 2 20730589 20736938 PCT