Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1459 ATGTCTACTTCAAAGAGCATCAGCAGTTCTAGTGAAGATGACAATGAACTTAGAAGAGGGCCTTGGACACTTGAAGAGGATAATCTACTTGCCCAATACATTTCTAATCATGGTGAAGGTCGATGGAATTTGCTAGCTAAACGTTCAGGATTAAAGAGAACTGGAAAAAGTTGCAGATTAAGATGGTTAAATTATCTAAAACCAGATGTAAAGCGGGGAAATTTAACCCCACAAGAGCAGCTTTTAATTCTTGAACTCCACTCAAAGTGGGGAAACAGGTGGTCAAAAATTGCACAACATTTACCAGGCAGAACAGATAATGAAATAAAGAACTATTGGAGGACTCGAATTCAGAAACAAGCAAGGCATTTGAGAATTGAAACAGATAGCACAGAGTTTCAAGAACTTGTTAGGCATTTCTGGGTGCCAAGATTGCTTCAGAAAGCAAGAGAATCATCTTCTTCAGCCATGTCAATCCATAACCAGCCAATTCCTTTGCCTCTTGATGGTGTTTCTCAGCATTTAACTGTTGGGACAATACCAACACAAGCCCCTATGCAGGGACCTTGTATGAATGAAGCAGGTTCCACTTACTTAGATCAACATGAGCATAACTCAGATTCTGAGCACAACAACGGCTCATGTATCTCCCTTTCTGAATCAGCAAATATCCCAAAAGTGCATCAGGATTTGGGATACACCACTAGACAATTTCACGCATTGAATAACAACAATAACTTTGGTACCTACACATATGATGGTTATCATGTAAATAACAATGCCTATGAGATTGACACCTTCAAAATTGCAACTCCAAGGGTAACTGAGCATGTGCAATACCCAGTTGGAGATTGTCAAATGGCAGGAAGCAATTGGGTAAACAATGGTTTTGCATGTAGCATGTGGAACATGGATGAACTGTGGCAATTTAGTAACTTACAAAAATAA 948 0.3935 MSTSKSISSSSEDDNELRRGPWTLEEDNLLAQYISNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLRIETDSTEFQELVRHFWVPRLLQKARESSSSAMSIHNQPIPLPLDGVSQHLTVGTIPTQAPMQGPCMNEAGSTYLDQHEHNSDSEHNNGSCISLSESANIPKVHQDLGYTTRQFHALNNNNNFGTYTYDGYHVNNNAYEIDTFKIATPRVTEHVQYPVGDCQMAGSNWVNNGFACSMWNMDELWQFSNLQK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1459 315 Gene3D - 19 71 - -
Apr2g1459 315 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Apr2g1459 315 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Apr2g1459 315 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Apr2g1459 315 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 3 310 - -
Apr2g1459 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Apr2g1459 315 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Apr2g1459 315 SMART sant 18 68 IPR001005 -
Apr2g1459 315 SMART sant 71 119 IPR001005 -
Apr2g1459 315 Gene3D - 75 118 - -
Apr2g1459 315 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 310 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr2g1459 315 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Apr2g1459 315 CDD SANT 76 115 IPR001005 -
Apr2g1459 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Apr2g1459 315 CDD SANT 21 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1459 Apr-Chr2 20650154 20651925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1459 14 158 MYB Transcription Factor Family AT1G68320 75.862 1.01e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g1459 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1459 K09422 - gmx:778045 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1057 6 15252967 15254265 Apr2g1459 2 20650154 20651925 ECH
Apr2g1459 2 20650154 20651925 Apr2g1459 2 20650154 20651925 ECH