Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1408 ATGAATAGAGGTGTCTTGCAAAGCTCACCGGTGCAACAAATGATGGCCGGGAACCCTAACAACTGGTGGAACATCAACACCATGCGCCCTCCTCTTCCTCAAGCTTCTCCTTTCTTGTCCACTCCTTCCAATTTTCTATATACCCCCTCTTCTTCTCTTCCTTTTCCTTCTTGGCATGATCAGAATCAAGACCTACCCGAGTCATGGAGCCAGCTTCTCATGAATGGGCTGGTGTCTGAAGAAGACAAAGGAGGTATGTGCCAGGTTCAGTCTAAGAGGTTGGAGAACTGGGAGGAACAAATGTTAAGTCAAGCTCCAAGTGCTCCTCTTGTTGATGTTAAGCAAGAAAGCTCGGTGCACAGCTATGTATATGGACATGGAAACGAAGATTTTCAGGCAGCAAAACCAACTTGGTCTCAAATAGTGCCTGCTTCTTCTACAAAATCCTGTGTAACAAGTTTCAGTAGCAGCATGTTGGATTTCTCTAACAATAAGACGGATGCTAGGCCTCCTCCTCCGGATCCATCTTCAGAGTGCAATAGCACTGCAGTTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGTCTACAACTCAGTCGAACTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACAGCCCTCCATCAACTCGTTTCCCCATTTGGAAAGACTGACACGGCATCTGTCTTGTTAGAAGCTATTGGGTATATTAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATATTTGGGCAGTGGAACAGGAAACATGAGGCACCATCAATCTGTAAGAAATAATATCAACCCATTTCTGGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAAAACTGTTTGAAGAGGAAAGCAACTAGTGAGCAGGATTCTCAAGAAGAAACAAAGAAGGACCTGAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACGCTGCAAGTTGGAAGTGATAATGGAGCTGACTATTGGGCTCCTGCTTTTGGCGGGGGATTTCGGTAG 1050 0.4571 MNRGVLQSSPVQQMMAGNPNNWWNINTMRPPLPQASPFLSTPSNFLYTPSSSLPFPSWHDQNQDLPESWSQLLMNGLVSEEDKGGMCQVQSKRLENWEEQMLSQAPSAPLVDVKQESSVHSYVYGHGNEDFQAAKPTWSQIVPASSTKSCVTSFSSSMLDFSNNKTDARPPPPDPSSECNSTAVGGAFKKARVQPSTTQSNFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGTGNMRHHQSVRNNINPFLVQGEKNCIFPEDPGQLLNENCLKRKATSEQDSQEETKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1408 349 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 335 - -
Apr2g1408 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 253 IPR036638 GO:0046983
Apr2g1408 349 CDD bHLH_AtbHLH_like 202 250 IPR045239 -
Apr2g1408 349 PANTHER OS05G0228400 PROTEIN 17 335 - -
Apr2g1408 349 Gene3D - 203 252 IPR036638 GO:0046983
Apr2g1408 349 MobiDBLite consensus disorder prediction 162 182 - -
Apr2g1408 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Apr2g1408 349 Coils Coil 298 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1408 Apr-Chr2 20164788 20168630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1408 1 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.288 7.92e-68 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1408 - - gmx:100785156 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1408 2 20164788 20168630 Apr2g1408 2 20164788 20168630 ECH
Apr2g1408 2 20164788 20168630 Apr6g1141 6 16037936 16042096 PCT