Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1406 ATGTCTGAGGCATTGGAACATGGGTATGTTGAGGTTCCTTCAATGAAAGGGTGTGAAGAGTTGAACCTGAAGGCTACTGAGCTGAGACTTGGGTTGCCAGGGTGTGAGTCACCAGAGAGGGATGATGTACTTAAGACTGTGGTTTCTGGGGCTAAGAGGGGTTTCTCTGATGCCATTGATGCTGGATCTCCCAACTCTCTCACTCTCACTGCTGCAACTGAATGCACCAACCAACCAACCCTTGTCAAGGAAACTGTTCCACACTCTCCAAACCAACCATTGCATGAGAAGAAGTCCCATATTACTGCTCCATCTGCAAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCTTCTTTCAGGAAGAACTCAATGGCTACTCAGCCTCAAAAGAATGATGCTGATACAGAAGCCAAGTCTGGATGCCTTTATGTAAAAGTCAGCATGGAAGGCGCCCCATACCAGAGGAAAGTGGATCTGAATAGTTTTAGCACTTACAGGGAACTTTCTTTGGCACTCGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTTATGGGGTTTCTAGTCGAGAAAATTTAAGTGAGAGTAGATTGATGGATCTCCTTCATGGTTCAGAATACGTTCTTACCTATGAAGACAAGGATGGTGATTTGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGAATCTTGCAAGAGGCTGAGGATAATGAAAAGTTCTGAAGCAATTGGGTTAGCACCTAGAGCCATGGAAAAGTGCAAAAGTCGGAACTAG 789 0.4512 MSEALEHGYVEVPSMKGCEELNLKATELRLGLPGCESPERDDVLKTVVSGAKRGFSDAIDAGSPNSLTLTAATECTNQPTLVKETVPHSPNQPLHEKKSHITAPSAKAQVVGWPPIRSSFRKNSMATQPQKNDADTEAKSGCLYVKVSMEGAPYQRKVDLNSFSTYRELSLALEKMFSCFTISQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDLMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1406 262 Pfam AUX/IAA family 26 253 IPR033389 -
Apr2g1406 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 62 IPR003311 GO:0005634|GO:0006355
Apr2g1406 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 81 255 IPR003311 GO:0005634|GO:0006355
Apr2g1406 262 ProSiteProfiles PB1 domain profile. 142 244 IPR000270 GO:0005515
Apr2g1406 262 Gene3D - 136 256 - -
Apr2g1406 262 PANTHER AUXIN-INDUCED PROTEIN 81 255 - -
Apr2g1406 262 PANTHER AUXIN-INDUCED PROTEIN 16 62 - -
Apr2g1406 262 SUPERFAMILY CAD & PB1 domains 139 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1406 Apr-Chr2 20116055 20118883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1406 146 252 B3 DNA Binding Superfamily AT4G23980 30.841 2.95e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr2g1406 AUX_IAA 2.1e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1406 K14484 - gmx:100778529 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1406 2 20116055 20118883 Apr2g1406 2 20116055 20118883 ECH
Apr2g1406 2 20116055 20118883 Apr6g1142 6 16070890 16074110 PCT