Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1401 ATGGAACGCATCGTTGGCGCCAAGTTCAAGCTCGGTCGCAAGATCGGAAGTGGATCCTTCGGCGAAATCTACCTCGCTACGCATATTGATACCTTCGAGATCGTTGCCGTCAAGATCGAGAACAGTAAAACAAAGCATCCGCAACTGCTTTATGAGGCAAAGCTCTACTATATTCTTCAAGGAGGAAGTGGCATTCCGAGCATAAAATGGTCTGGCGTGGACGGGGAGGATAACGTGCTTGTTCTTGACTTGCTTGGGCCGAGTCTTGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACTGTATTAATGTTGGCTGATCAAATGATAACTAGAATAGAATATGTGCATTCTAAAGGATTTTTACATAGGGATATTAAGCCCGATAACTTTCTCATGGGACTTGGTCGTAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCTAAACGATATCGGGATTCCACAACCAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACGGGGACTGCACGTTATGCAAGTTGCAATACTCACCTTGGAATTGAGCAAAGTCGACGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTCAGAGGAAGCCTTCCTTGGCAGGGTTTAAAGGCTGCTACAAAGAAACAAAAGTATGATAAAATATGTCAGAAGAAATTATCAACTCCTATTGAGGTACTATGCAAATCACATCCAGTAGAGTTTGCTTCGTACTTCCATTACTGCCACTCTTTGACATTTGATCAGCGACCAGATTATGGATTCTTGAAGCGCCTCTTTAGGGACTTATTTGCTCGAGAAGGTTATGAATTTGATTTTGTTTTTGATTGGACCATTTTAAAGTACCAGCAATCACAAAAGAATATAGTGCAACCTCCCTTATCTCCAGTTCCAGGAGCAAGTAACAGTCGTGCAATGCCAATGGATATTGACAACCATCAAGGGCATGTTAAAGAGCGCTTTGGAACAGGCGATGCTACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCAGTCAGTAGAAATTTAAGTTCTGAGAATCCACTTGACAAAAATATTTTTGGTGAAGCAAATATGCCCTCTACTTCATATTCCCCTGCTGGTGCTTCAAAAAGGAACTCCTTGAAGCCAGCCTTCTCTGCTGAAGCCTCCAACTCTGGACATGGGCAAGGCAGTAAAATTGGACCATCAAGTAGCTGGATGTCATCTCTGCAGCGCATGCCTTCTGCCAAATGA 1275 0.4259 MERIVGAKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYYILQGGSGIPSIKWSGVDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDFVFDWTILKYQQSQKNIVQPPLSPVPGASNSRAMPMDIDNHQGHVKERFGTGDATGSGVKIQFKSPVSRNLSSENPLDKNIFGEANMPSTSYSPAGASKRNSLKPAFSAEASNSGHGQGSKIGPSSSWMSSLQRMPSAK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1401 424 MobiDBLite consensus disorder prediction 304 323 - -
Apr2g1401 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1401 424 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1401 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Apr2g1401 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Apr2g1401 424 MobiDBLite consensus disorder prediction 350 424 - -
Apr2g1401 424 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Apr2g1401 424 MobiDBLite consensus disorder prediction 390 424 - -
Apr2g1401 424 MobiDBLite consensus disorder prediction 350 383 - -
Apr2g1401 424 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1401 424 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
Apr2g1401 424 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 409 - -
Apr2g1401 424 PANTHER CASEIN KINASE-RELATED 1 409 - -
Apr2g1401 424 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1401 Apr-Chr2 20085018 20090859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1401 4 236 AGC Kinase Gene Family AT3G08720 26.050 3.21e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Apr2g1401 Pkinase 3.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1401 K08960 - gmx:100800342 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1401 2 20085018 20090859 Apr2g1401 2 20085018 20090859 ECH
Apr2g1401 2 20085018 20090859 Apr6g1150 6 16156953 16161102 PCT