Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1391 ATGGCTGAGCTACCAAGCTCACCATCATCATCATCGCAACCATGTTTACCAATCGTCACTATCGAGTCTCATAAGCACTCATCCATGGAGGCCCAGTTACCGGGCCCGGATCAAAAGAAGCCCAGGCGAGCCCGAGATAGCACCAGCAAACACCCGGTTTACAGAGGCGTACGGATGCGGGCCTGGGGAAAGTGGGTATCCGAAATCCGCGAGCCCCGAAAGAAGAACCGGATCTGGCTCGGCACCTTCGCCACCCCGGAGATGGCAGCGCGTGCCCATGACGTCGCGGCGCTCACTATTAAAGGCAACTCCGCTATCCTTAACTTCCCCGAACTCGCGGCTTCGTTGCCTCGACCCGACTCTAACTCGCCTCGAGATGTTCAAGCCGCAGCCGCTAAAGCCGCCGCCATGGATGTTTTTGATCCCCAAACGACGTCGCATTTGTCTTCTTCTTCTTCTTCATCGTCGTCTTCGTCGCTGTCGCAGTCTTCTTCTTCGTCTTCGTCATTAGCGGTGTCTTCTGGCTCCGGCGACCCGTCCACTCCGGAGGAGTTGGATGAAATAGTGGAGCTTCCGAGTCTGGGAACGAGTTTTGAACTACCCGACCCGAGTAACGAGTTGGTGTTTTTTGACCCGGTTGATGGGTGGCCCTATTCTCACCCTTGGTGTCACGGCATTTATGATGACAGGGATTGTGGGGGGTATTTTATTGGGGATCAGATTTCAATGCAAGACTCAGAAAGTGTGATTCTTTGTGGCTTTGAGGGTTCATTGTGGCAGCAGTAA 786 0.542 MAELPSSPSSSSQPCLPIVTIESHKHSSMEAQLPGPDQKKPRRARDSTSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASLPRPDSNSPRDVQAAAAKAAAMDVFDPQTTSHLSSSSSSSSSSSLSQSSSSSSSLAVSSGSGDPSTPEELDEIVELPSLGTSFELPDPSNELVFFDPVDGWPYSHPWCHGIYDDRDCGGYFIGDQISMQDSESVILCGFEGSLWQQ* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1391 261 MobiDBLite consensus disorder prediction 36 52 - -
Apr2g1391 261 MobiDBLite consensus disorder prediction 1 52 - -
Apr2g1391 261 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Apr2g1391 261 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Apr2g1391 261 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Apr2g1391 261 MobiDBLite consensus disorder prediction 142 184 - -
Apr2g1391 261 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Apr2g1391 261 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Apr2g1391 261 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Apr2g1391 261 MobiDBLite consensus disorder prediction 1 18 - -
Apr2g1391 261 MobiDBLite consensus disorder prediction 142 180 - -
Apr2g1391 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 260 - -
Apr2g1391 261 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Apr2g1391 261 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Apr2g1391 261 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 23 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1391 Apr-Chr2 20000630 20001817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1391 38 233 AP2-EREBP Transcription Factor Family AT5G11590 59.091 2.83e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr2g1391 AP2 6.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1391 K09286 - gmx:100778201 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1391 2 20000630 20001817 Apr2g1391 2 20000630 20001817 ECH
Apr2g1391 2 20000630 20001817 Apr6g1160 6 16238909 16239530 PCT