Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1383 ATGGATAGCGACAACGTTAACCTTATAGTTTCACAGAGCAACAACAATATTGTGATGATGCCGCAGTCTTCGTTGTCGGAGTCAAACAATTTCATAGATTTGGAAATTTTTGATCTGGACGAGGCTCTTGCGGTGGACGGAGAATCACGGCATGTATTTGCAGCGTGGAAGACCTTCGTCTCCAACTTGCCGACGGTTAACGACGTGACGGAGGATGATGTATGCTCCGTTTGCATGGAAGGGTTCGGTGACGATAACTCAGATGGGGAAAAGAAAAGAGTTCCGTGCGGTCACGTGTACCACTCAAACTGCATCACCCTCTGGTTAGAGCACTGCAACTCTTGCCCGCTGTGTCGCCGCCATATCTCTCTTCATATATAA 381 0.4777 MDSDNVNLIVSQSNNNIVMMPQSSLSESNNFIDLEIFDLDEALAVDGESRHVFAAWKTFVSNLPTVNDVTEDDVCSVCMEGFGDDNSDGEKKRVPCGHVYHSNCITLWLEHCNSCPLCRRHISLHI* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1383 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 124 IPR013083 -
Apr2g1383 126 SUPERFAMILY RING/U-box 67 124 - -
Apr2g1383 126 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 35 123 - -
Apr2g1383 126 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 35 123 - -
Apr2g1383 126 ProSiteProfiles Zinc finger RING-type profile. 75 119 IPR001841 -
Apr2g1383 126 SMART ring_2 75 118 IPR001841 -
Apr2g1383 126 Pfam Ring finger domain 74 119 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1383 Apr-Chr2 19945979 19946359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1383 29 122 C3H Transcription Factor Family AT5G01980 36.000 1.28e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1383 K22378 - gmx:102669154 193.356