Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1373 ATGTCAAATTTGCATTGCTTTTTCTATGTTTTAGTAGTTCTTCTTCTTCTACAGAATCCGTGTGCAACAAGATGCCACACCAAGGGAATTAGACCAAGGCCTTCTACAGGGCTATCGACCAATATAACAAAGGTCCAATTTTCAGAACAACAGTTCATGAAATGGGTTAGATTTGTGGGTGGTCTCAAACATTCTGTCTTTAGAACAGCAAAAAATAAGCTCTTCCCTTCTTACACTTTGCACGTTTCTAAGAATCATGGTAAAGGAGGTTTTTCATCAATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATCTTGTGAGAGTAGTCATTAAGGTTCATGCAGGGGTTTACACGGAGAAAGTTAATATTCCTGCTTTGAAATCCTTCATAACGATACAAGGAGCAGGTGCAGATAAGACTATTGTTCAATGGGGTGACACTGCTCAAACTCCTGGGCCAAGAGGCCAACCACTTGGAACCTATGGTTCTGCTACTTTTGCGGTGAATTCACCTTATTTCATTGCCAAGAACATCACATTCAAAAACACTGCCCCAATTCCAGCACCTGGAGCAGTTGGAAAACAAGCAGTGGCATTGAGAATTTCAGCAGATACAGCAATATTCCTAGGCTGCAAATTCTTAGGAGCACAAGACACACTCTATGATCATGTGGGTAGGCATTACTACAAGGATTGTTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATGCTCTCTCTCTATTTGAGGGATGTCACGTGCATGCCATAGCACAACTTACAGGGGCCGTAACAGCACAAGGCAGGAACAGTTTATTAGAAGACACGGGTTTCTCGTTTGTCCACTGTAAGGTCACGGGTTCAGGGGCACTTTACCTTGGAAGGGCTTGGGGTTCCTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAATATCATCATTCCCAAAGGATGGTATAATTGGGGTGATCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTATGCGGGGAGAGTATCGTGGTCAAGAGAACTCACTGATGAGGAAGCTAAGCCATTTATTTCACTTAGCTATATTGATGGCTCTGAATGGATCAATATTTCTTTTTGA 1143 0.4217 MSNLHCFFYVLVVLLLLQNPCATRCHTKGIRPRPSTGLSTNITKVQFSEQQFMKWVRFVGGLKHSVFRTAKNKLFPSYTLHVSKNHGKGGFSSIQAAIDSLPFINLVRVVIKVHAGVYTEKVNIPALKSFITIQGAGADKTIVQWGDTAQTPGPRGQPLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQAVALRISADTAIFLGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQLTGAVTAQGRNSLLEDTGFSFVHCKVTGSGALYLGRAWGSFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINISF* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1373 380 ProSitePatterns Pectinesterase signature 2. 235 244 IPR033131 -
Apr2g1373 380 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 378 - -
Apr2g1373 380 PANTHER PECTINESTERASE 3 378 - -
Apr2g1373 380 Pfam Pectinesterase 85 372 IPR000070 GO:0030599|GO:0042545
Apr2g1373 380 Gene3D - 77 379 IPR012334 -
Apr2g1373 380 SUPERFAMILY Pectin lyase-like 75 378 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1373 Apr-Chr2 19845201 19848446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1373 86 376 Carbohydrate Esterase AT5G47500 51.027 1.50e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1373 K01051 - gmx:100802832 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1373 2 19845201 19848446 Apr2g1373 2 19845201 19848446 ECH