Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1364 ATGTACAAGACCTGGATTCTAACTTTTCTTCTCCTCCTCTTCCTTCTTCATTCAAATGTAAATGCTGTTGGTGTTGGTGTTGGTGTTGGAGGTATTGGTGTAGGTATTGGTATTGGTAATGGTAATGGGGGTGCTACCCCACGACCCTCAGGATCACCAGTGTCAAAGCTGAAAAATGCTTACATAGCTCTGCAAGCATGGAAATCCGCAATCACTGATGACCCATTGAAGATTTTAAGCAATTGGGTTGGTCCTGAAGTGTGTTCTTACAAAGGAGTCTTCTGTTCAATTCCTCAAGATGAAGATGGAATTGCTACATCAGGTCCAACTCATTCTCTTGTTGTTGCAGGAATAGATCTCAACCATGCAAATCTCCAAGGAACTCTTGTCAAAGACCTCTCTTTACTTACTGATATCACTCTTCTCCACCTCAACAGTAACAGGTTTTCTGGTACTGTTCCTGACACATTCAGAGACCTCATTTCCCTGCAAGAGTTAGACCTCAGCAATAACCAACTTTCAGGTCCTTTTCCCATTGTTGCTTTATCCATGCCAAGCCTTGTCTACCTGGACCTCAGATTCAACAGCTTCTCCGGGTCACTTCCTGAAGAACTCTTCAACAAGAAACTGGATGCAATATTTCTCAACAACAACCAATTTGAAGGTGAAATCCCACAGAACTTGGGTAACTCACCAGCATCAGTGATAAACTTGGCTAACAACAAGTTAAGTGGAAGCATCCCATTTAGCTTTGGCTTCATGAGTTCTAAACTAAAGGAGATTCTCTTCCTCAATAACCAGTTAACAGGTTGCATTCCTGAGGGAGTGGGAATCTTCACTGAGATGCAAGTTCTTGATGTGAGCTTTAACTCACTCATGGGTCATTTGCCAGACACAATGTCTTGCTTGCAAGACATAGAGGTCCTCAATTTGGCACACAACAATCTTTCTGGGGAGTTATCTGATGTGATATGCTCTTTGAGAAGCCTAGTGAATCTAAGTGTTGCTTTCAATTTCTTCTCTGGGCTTAGCCAACAATGTTCAAAGCTTTTCAATTTCAATGTGGGGTTTGATTTCTCAGACAATTGTATTCCTGGAAAGGACATGCAGAGACCTGAACCAGAATGTTCTACGATCCCTGGTGGTAGTTTGAATTGTCTTAGAATTCCTACTCCAAAGCCTCTTGTTTGTGGTACACTTGCTGCAAGTTTGTCTAAGCACACAAATCCACCTTTCTCATATCCCTGA 1248 0.4215 MYKTWILTFLLLLFLLHSNVNAVGVGVGVGGIGVGIGIGNGNGGATPRPSGSPVSKLKNAYIALQAWKSAITDDPLKILSNWVGPEVCSYKGVFCSIPQDEDGIATSGPTHSLVVAGIDLNHANLQGTLVKDLSLLTDITLLHLNSNRFSGTVPDTFRDLISLQELDLSNNQLSGPFPIVALSMPSLVYLDLRFNSFSGSLPEELFNKKLDAIFLNNNQFEGEIPQNLGNSPASVINLANNKLSGSIPFSFGFMSSKLKEILFLNNQLTGCIPEGVGIFTEMQVLDVSFNSLMGHLPDTMSCLQDIEVLNLAHNNLSGELSDVICSLRSLVNLSVAFNFFSGLSQQCSKLFNFNVGFDFSDNCIPGKDMQRPEPECSTIPGGSLNCLRIPTPKPLVCGTLAASLSKHTNPPFSYP* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1364 415 Gene3D Ribonuclease Inhibitor 231 356 IPR032675 -
Apr2g1364 415 Pfam Leucine rich repeat 140 196 IPR001611 GO:0005515
Apr2g1364 415 PANTHER LRR/EXTENSIN 4 410 - -
Apr2g1364 415 PRINTS Leucine-rich repeat signature 163 176 - -
Apr2g1364 415 PRINTS Leucine-rich repeat signature 303 316 - -
Apr2g1364 415 SUPERFAMILY L domain-like 62 363 - -
Apr2g1364 415 Pfam Leucine rich repeat N-terminal domain 62 96 IPR013210 -
Apr2g1364 415 SMART LRR_typ_2 184 208 IPR003591 -
Apr2g1364 415 SMART LRR_typ_2 279 303 IPR003591 -
Apr2g1364 415 SMART LRR_typ_2 327 350 IPR003591 -
Apr2g1364 415 SMART LRR_typ_2 160 183 IPR003591 -
Apr2g1364 415 SMART LRR_typ_2 136 159 IPR003591 -
Apr2g1364 415 Gene3D Ribonuclease Inhibitor 59 230 IPR032675 -
Apr2g1364 415 ProSiteProfiles Leucine-rich repeat profile. 162 183 IPR001611 GO:0005515
Apr2g1364 415 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 4 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1364 Apr-Chr2 19778532 19779779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1364 56 388 Leucine-rich Repeat extension Gene Families AT3G24480 49.263 1.95e-104 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1364 - - gmx:100820611 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1364 2 19778532 19779779 Apr2g1364 2 19778532 19779779 ECH