Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1356 ATGATGTTGGGGGAGACCCACCGCGCAAACCCAACCATACACGTGCCACCGTGGCCAATCCTCCATGATTCCACGCCGGAGATCTTTTCCCCTTACACAGCAAATGCTGATTACTCTCCCTACACTTTGCAAGAAGCACTCACTGCTCTCCAGCACTATGTTCCCGCCAGCGACACCGATGCTGAGTCTGACTCCGAGGTTCCTAACCTGGAACCGGACGTTCCGGTTGACGCCTATTCCTGTGACCATTTCCGCATGTTCGAGTTTAAGGTTCGAAGGTGCGCACGTGGCAGGTCGCATGACTGGACCGAGTGTCCCTACGCTCACCCCGGCGAAAAGGCTCGCCGCCGTGACCCGAGGAAGTACCACTACTCCGGCACGGCGTGTCCCGATTTTCGCAAGGGGAATTGCAAAAAGGGTGATGCGTGTGAGTTCGCGCATGGGGTTTTCGAGTGCTGGCTTCATCCCGCCCGTTACCGTACTCAGCCTTGCAAGGACGGCACCAGTTGCCGCCGCCGGGTTTGTTTCTTCGCTCACACGCCTGACCAACTCAGGGTTCTGCCTCAGCAGAGTCCACGGAGTGCCAATTCTGCTGATTCTTATGATGGGTCTCCTCTGAGACACGTGGTTGAGTCGTCTTGTTCGAAGACGCTTCCTTATGTGTCTTCTCCTGGTTCGATTTCCCCGCCGATGAGTCCGCCGGCGGAGTCGCCTCCGATGTCGCCGATGACTCGTCGGTCTTTGGGTTCGGGGTGTGTGAATGTGAATGAGATGGTGGCTTCTCTGCGGAATTTGCAGCTGGGTAAGGTGAAGTCGTTACCTTCTTCATGGAACGTGCCTATGGGGTCTCCTGGGTTCGGATCTCCAAGAGGACCCGTAATCCGACCCGGATTCTGTAGCCTGCCCACGACTCCAACGCAGGCACCGGGTCGTGGTGGGGTCAACTATTTTGACTTGTGGGATCAGAGTTGTGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCTGGGAGGGGCATAAGGGCGAGGATGTTTGAGAAGTTGAGCAAGGAGAACTCTTTGGATATGTCGGGTTCAGGTTCACTATCTGGAGCTCCGGATGTTGGGTGGGTTTCGGATCTTGTGAACCGTTAA 1131 0.5623 MMLGETHRANPTIHVPPWPILHDSTPEIFSPYTANADYSPYTLQEALTALQHYVPASDTDAESDSEVPNLEPDVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPDQLRVLPQQSPRSANSADSYDGSPLRHVVESSCSKTLPYVSSPGSISPPMSPPAESPPMSPMTRRSLGSGCVNVNEMVASLRNLQLGKVKSLPSSWNVPMGSPGFGSPRGPVIRPGFCSLPTTPTQAPGRGGVNYFDLWDQSCEEEPVMERVESGRGIRARMFEKLSKENSLDMSGSGSLSGAPDVGWVSDLVNR* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1356 376 ProSiteProfiles Zinc finger C3H1-type profile. 124 150 IPR000571 GO:0046872
Apr2g1356 376 SMART c3hfinal6 158 181 IPR000571 GO:0046872
Apr2g1356 376 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Apr2g1356 376 MobiDBLite consensus disorder prediction 222 245 - -
Apr2g1356 376 MobiDBLite consensus disorder prediction 226 240 - -
Apr2g1356 376 PANTHER UNKEMPT FAMILY MEMBER 7 375 IPR045234 -
Apr2g1356 376 Gene3D - 124 187 - -
Apr2g1356 376 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 375 - -
Apr2g1356 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 148 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1356 Apr-Chr2 19695895 19698165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1356 72 280 C2H2 Transcription Factor Family AT5G12850 47.005 1.38e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr2g1356 zf-CCCH 3.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1356 - - gmx:100789199 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1356 2 19695895 19698165 Apr2g1356 2 19695895 19698165 ECH