Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1355 ATGGGAAGAGCTCCATGTTGTGACAAAGCCAACGTGAAAAGAGGGCCATGGTCTCCTGAAGAAGATGCAACCCTCAAAAACTACCTTAAGAAACATGGCACAGGTGGTAATTGGATAGCACTCCCAAAAAAAGCAGGCCTTAGGCGCTGTGGGAAGAGCTGTCGTTTGAGATGGCTCAACTATCTCAGGCCTCATATCAAGCATGGAGGTTTCACTGAGGAGGAAGACCAAGTTATCTGCACCCTCTATGCTACCATCGGAAGTAGGTGGTCAGTTATAGCAGCACAGTTACCTGGGAGAACGGACAATGATGTGAAAAATCACTGGAACACTAAGTTAAAGAAAAAGTTTTTGGCACCAAACACCAATGCCCCTGGCAACACTGGTTGTCCACAATTCTTAACTTCAAGTACTCCTCAGTCTCAAGTTGAACACTTTGTCTTCGATCATGAGAACTCAGTTAAGTCCCATGTTTTGGGTTTGGAGCAAACACCAATTACAGCTCCTTTACCATTGCCTTTGGAACCGGATGCTTCAGTTCTTGGCAGTGGTTGTAAAGTACCACTGGCTGAGGAAGTTTCACTTCTTTCAAATTCAGCTTCCTTTGCAAAGGTGAACAGTGGTACCCAATGGTTTGGATGTTATGACCATGAAGGTGAAGATGAGGCAATTTTGCTTGATTATGTGTATGAAGATCTCCTCCGTAATGGGTTTGTTTCTCAAGATAACAGCATGTGCAACCAAGTTGGCCCATCATCTGACTAA 765 0.4444 MGRAPCCDKANVKRGPWSPEEDATLKNYLKKHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPHIKHGGFTEEEDQVICTLYATIGSRWSVIAAQLPGRTDNDVKNHWNTKLKKKFLAPNTNAPGNTGCPQFLTSSTPQSQVEHFVFDHENSVKSHVLGLEQTPITAPLPLPLEPDASVLGSGCKVPLAEEVSLLSNSASFAKVNSGTQWFGCYDHEGEDEAILLDYVYEDLLRNGFVSQDNSMCNQVGPSSD* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1355 254 CDD SANT 71 113 IPR001005 -
Apr2g1355 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr2g1355 254 Gene3D - 70 129 - -
Apr2g1355 254 PANTHER OS09G0431300 PROTEIN 1 125 - -
Apr2g1355 254 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Apr2g1355 254 CDD SANT 16 62 IPR001005 -
Apr2g1355 254 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Apr2g1355 254 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Apr2g1355 254 Gene3D - 7 68 - -
Apr2g1355 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Apr2g1355 254 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Apr2g1355 254 SMART sant 13 64 IPR001005 -
Apr2g1355 254 SMART sant 67 115 IPR001005 -
Apr2g1355 254 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr2g1355 254 PANTHER OS09G0431300 PROTEIN 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1355 Apr-Chr2 19687706 19689133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1355 1 118 MYB Transcription Factor Family AT5G65790 83.051 5.63e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g1355 Myb_DNA-binding 4.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1355 K09422 - gmx:778160 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1355 2 19687706 19689133 Apr2g1355 2 19687706 19689133 ECH