Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1324 ATGTCAACTGATTCCACTGCAATGAATACGCAGCCAGACGCTGCCGCTCCCAACCTTGGCGAAGGAGGAGAGAGGAGGAGCATAAACCCTGAGCTATGGCAAGCTTGTGCGGGACCGTTGCGCAACCTTCCTTCGCCGGGGACTCACGTCGTTTACTTCCCTCAAGGACACAGCGAACAGGTTGCTGCATCTTTGAAGCAGGATGTGGATGCCCAAATCCCAAACTATCCTAATCTTCCCTCCAAGTTACCGTGTCTCCTTCACAATGTCACCTTGCATGCAGATCCAGAAACTGATGAAGTATATGCTCAGATGACACTTCAGCCGGTGCAATCTTTTGATGCAGATGCCTTACTAAGATCAGATCTTTCCCTCAAGTCAAGTAAGCCCCAACCTGAGTTTTTCTGCAAACAACTGACAGCGAGTGATACAAGTACTCATGGAGGTTTCTCTGTACCCCGCCGTGCTGCAGAGAAGATTTTCCCCCCTCTTGATTACTGTGTTGAACCACCTGTTCAAGAACTTGTGGCCAGGGATTTGCATAATAACATTTGGAGATTCCGCCATATATATCGTGGAAAACCAAAACGTCACTTGCTTACAACTGGATGGAGTCTATTTGTCAGTGGAAAGAGACTTTTAGCTGGAGACTCTGTTTTATTTGTAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCATCAATATATCATCCTCAGTACTATCTAGTGATAGTATGCACATTGGAATTCTGGCTGCCGCAGCTCATGCTGTTGCAAACAATAGTCCTTTCACTGTGTTTTATAATCCTAGATATATGGGTACAATTGTAGGTGTCAGTGATCTGGATTCTGTGAGATGGAAAAACTCACTATGGCATAATTTGCAGGTTGGTTGGGATGATGCAACTGCTGGGGAAAGGCAAAGTAGGGTCTCCATCTGGGAAATTGAACCTGTGACTGCTCCATATTTCATCTGCCCACCTCCATTCTTCAGACCCAAGAGACCTAGACTACCAGGAATGCTAGATGATGAGCCATCAGATTTCAATAACCTTTTCAAGAGTACAATGCCTTGGGTTGGTGATGATATGTGCATTAACGATTCCCAAGCTCTTCCTGGCTTGAGCTTAGTTCAATGGATGAGCATACAGCAAAATCCTGCTCCAGCTAACTCATTTCAATCAAATTATGTGCCTTCCATGGCCGGATTGGTTCTGCAAAATCTTCCTAGTGCAGATACCTCAAATCAGCTGGGATTTTCTACTTCACAAATCTCTCAGTCGAACAATTTATCCTTTGATGCTCAGAAGATACTTCAGACTTCCCAGCAGCATGATCACATTCAGAAGCTACCATCCACATCCCCGCCACAGCAACCAAGGAACTTGATGAGTCAAACTTTACCACAGAGTGAAGTTCACACCCAACTTCTGAATCCCCAGAGTCTTGTCCAAACCAACAATATTCTTCAACAGCAACAATCATCCAGTCAAAACCACCAACTGCTTAGAGGTCTGTCTCAGAACCCACCTCAGCAACATCAAGTAACTACAATGGGTCAGAATCAACTGCAAAATTCGATTCAATCCCCTATGCCTGATTATGTTAATCATCAATTACAGATGTCTGATAATCAGGTTCAGCTTCAGTTGTTACAGAAGCTTCAACAGCAACAACAAACACTGTTGGCAAAGCAATCTGCTTTGCAGCAGCCTGCTCAACTTATTCAAATCCCAGACCAGCAGAGGAAGCTTTTAGATGTAGCACACAACTCTAGGGCCCTAACTCCTGGTCAAGTACTGGAAATTCCTCCTACTCTTCAAAACTCCCTCCCTGAGGCTAGATCTTTAACTCCTCAGATAACAATGCCTAGTAGTCAGAAAAATGTTCAACTCTCTAATCTATCCAAGCAACCTGGCTTATTGTCTGAAATTTCTGGTCATGTTGGACTTCCCCCTACAGCTACAACCAATCTACATTCAGCATCGGGCTGTAGTATACTGACTGGAGCAGGGCAATCAGTAATTACTGATGATGTTCCATCTTGTTCCACCTCACCTTCCTCAAATAACTTTGCCAATGCACTCCCTCCAGTGATAAGTTCCCAGATCCATAGGAGAACAATGGTAGAGGATGACATGGCTCTGTCTGCTGTCACGATCTTGAGTCCAAGTGTATTAGAAACCATGTCATCTAATGCAAACATGGTAAAAGATGTGCATTCAAAGTATGAAGTTAAGCCTTCTTTAAACATTTCCAAACATCAGACTCAAGGGAATTTTGCCCCTAAGGCCTACTTGAATGGTGGTGTGCAGACAGACTATTTGGATTCATCATCTTCTGCAACCTCGGTTTTCCTTTTTCAGAGTGATACTCATATGCATCAGAATAACAACCCATTGTCTTATAATCCACAGTCAATGCATTGTAGAGACAATACTCAAAATCTGGATGTTCAGGCTGACTCTAGGACCAACATTCCATATGGCAATCACATTAATGGGCAAATGGAAATGTCACCAAATCTAGATCCTCTTCTAACCAAAGGAACTATGGGGCTGGGTAAGGATTTGCCAAATACTATCTCCTCAGGAGGCTTGCTTGGGGACTACGAAAATAACAAAGATGCTCCAGAGCTTTCATCTTCAATGGTTTCTCATGCATTTGGAGTCCTTGATATGAGCTTTAATTCAATTGATTCCACCATAAACAGTAGTAGCTTCTTGAATAGTGGTCCAAGGAACCCACCATCATTGCCACTGCCACCGCCATTGTTGCCACCACCATCACAACAACATCAGTTTCAGCGGAAGAGAACATACACCAAGGTATATAAACGTGGAGCCGTGGGAAGGTCCGTAGACATTACACGATATTCAGGTTATGAAGAGCTTAAACAGGATTTGGCTCTTAGATTTGGTATTGAGGGACAGCTGGAAGATCGGCAAAGGATAGGTTGGAAACTCGTTTATGTAGATCATGAGAATGATGTTCTGCTTGTGGGAGATGACCCCTGGGAGGAGTTTGTTAACTGTGTACGCTGCATTAAAATACTTTCTCCTCAAGAAGTTCAGCAGATGAGTTTGGATGGAGATTTTAGCAATGGTGGCCTTCCATATCCAGCCGGCAGCAGCTCTGATGGTGGGAATACTTAA 3177 0.4388 MSTDSTAMNTQPDAAAPNLGEGGERRSINPELWQACAGPLRNLPSPGTHVVYFPQGHSEQVAASLKQDVDAQIPNYPNLPSKLPCLLHNVTLHADPETDEVYAQMTLQPVQSFDADALLRSDLSLKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYCVEPPVQELVARDLHNNIWRFRHIYRGKPKRHLLTTGWSLFVSGKRLLAGDSVLFVRDEKQQLLLGIRRANRQPINISSSVLSSDSMHIGILAAAAHAVANNSPFTVFYNPRYMGTIVGVSDLDSVRWKNSLWHNLQVGWDDATAGERQSRVSIWEIEPVTAPYFICPPPFFRPKRPRLPGMLDDEPSDFNNLFKSTMPWVGDDMCINDSQALPGLSLVQWMSIQQNPAPANSFQSNYVPSMAGLVLQNLPSADTSNQLGFSTSQISQSNNLSFDAQKILQTSQQHDHIQKLPSTSPPQQPRNLMSQTLPQSEVHTQLLNPQSLVQTNNILQQQQSSSQNHQLLRGLSQNPPQQHQVTTMGQNQLQNSIQSPMPDYVNHQLQMSDNQVQLQLLQKLQQQQQTLLAKQSALQQPAQLIQIPDQQRKLLDVAHNSRALTPGQVLEIPPTLQNSLPEARSLTPQITMPSSQKNVQLSNLSKQPGLLSEISGHVGLPPTATTNLHSASGCSILTGAGQSVITDDVPSCSTSPSSNNFANALPPVISSQIHRRTMVEDDMALSAVTILSPSVLETMSSNANMVKDVHSKYEVKPSLNISKHQTQGNFAPKAYLNGGVQTDYLDSSSSATSVFLFQSDTHMHQNNNPLSYNPQSMHCRDNTQNLDVQADSRTNIPYGNHINGQMEMSPNLDPLLTKGTMGLGKDLPNTISSGGLLGDYENNKDAPELSSSMVSHAFGVLDMSFNSIDSTINSSSFLNSGPRNPPSLPLPPPLLPPPSQQHQFQRKRTYTKVYKRGAVGRSVDITRYSGYEELKQDLALRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFSNGGLPYPAGSSSDGGNT* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1324 1058 MobiDBLite consensus disorder prediction 447 471 - -
Apr2g1324 1058 CDD B3_DNA 134 226 IPR003340 GO:0003677
Apr2g1324 1058 SMART B3_2 135 237 IPR003340 GO:0003677
Apr2g1324 1058 MobiDBLite consensus disorder prediction 914 941 - -
Apr2g1324 1058 PANTHER AUXIN RESPONSE FACTOR 278 1042 - -
Apr2g1324 1058 PANTHER AUXIN RESPONSE FACTOR 19 278 - -
Apr2g1324 1058 MobiDBLite consensus disorder prediction 499 528 - -
Apr2g1324 1058 SUPERFAMILY CAD & PB1 domains 958 1024 - -
Apr2g1324 1058 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 278 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr2g1324 1058 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 278 1042 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr2g1324 1058 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Apr2g1324 1058 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Apr2g1324 1058 SUPERFAMILY DNA-binding pseudobarrel domain 125 264 IPR015300 -
Apr2g1324 1058 Gene3D - 133 236 IPR015300 -
Apr2g1324 1058 Pfam AUX/IAA family 943 1031 IPR033389 -
Apr2g1324 1058 Gene3D - 259 329 - -
Apr2g1324 1058 MobiDBLite consensus disorder prediction 1 26 - -
Apr2g1324 1058 Gene3D - 941 1035 - -
Apr2g1324 1058 MobiDBLite consensus disorder prediction 922 937 - -
Apr2g1324 1058 ProSiteProfiles PB1 domain profile. 946 1030 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1324 Apr-Chr2 19418820 19426348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1324 23 451 B3 DNA Binding Superfamily AT1G19220 60.593 4.07e-175 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr2g1324 B3 2.9e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1324 - - gmx:100791531 1575.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1324 2 19418820 19426348 Apr2g1324 2 19418820 19426348 ECH