Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1320 ATGGCACTAAGTGGTTGGCCTTCTTGGATCATTTTCATTCTTCTTTTGCATGTCATTGCCTCTTCTGGGGCTTCAGATTCTGAATTGCTCCTTAAGGTCAAAGACAACCTACAAATTACCAATCATGTTTTAACCTCATGGAACACATCGTCATCTCCATGCACACATGATCATTCTCATTGGCGTGGGGTTCTGTGCTACCAAGGAAGAGTGTGGGGGTTGAAGCTTGAGAATATGGGACTCAAAGGGCTCATTGATGTGGACTCTCTTAAGCAGTTACCTTCTCTTAGAACCTTGAGTTTCATGAATAATGATTTTGATGGTACGTGGCCAGAAGTTAACAAGATAGTTGGTTTGAAGTCCCTTTACCTTTCTAATAACAAGTTTTCTGGGGAAATTCCTCCTAAAACCTTTGAGGGCATGCAGTGGTTGAAGAAAATACATTTGTCAAATAACCAGTTCTCGGGTGCAATTCCAGCTTCGCTTGCAATTTTGCCAAGGCTCATGGAGTTGAGGTTGGAGGGAAACAAATTTAATGGCACCATTCCCGAACTTAGACAGAGCAAATTTAAATCATTTAGTGTGGCTAATAATCAGTTGCATGGCCCAATTCCTGTTACCGTTAGTAAAATGCCGGTTTCTTCCTTTTCTGGTAACAGCGGGTTATGTGGAGCCCCATTGGAAGAGTGTCCTTCCAATAAACCCTCAACTGTGAGTATTGTTGTGGCTGTGGTAGTTGTTTGTGTGGCAGTGCTAGTGATTGCAGCAGTAATATTCATCCTTCATAGAAGAAAACAAGGAGCAACATCATCAGTGGAGTGTCCACCCTGTGGCCACAAGAAAGGAAAATCAGCGGAAGCAGGTGATGATAGTCGCAGGTCATCTAGATCAGTGAGTTCCAACCACAGCAGAAGAGGAGATCACATGAAGTTATCTTTTATCCGTGATGATAGAGAGAAGTTTGATTTGCAAGAGTTGCTAAGAGCTTCAGCTGAGATTTTGGGCAGTGGTTGCTTTAGTTCTTCTTACAAGGCTTCCTTGTTGAATGGCCCAACAATTGTTGTGAAAAGGTTTAAGCAAATGAACAATGTGGGGAAGGAAGAGTTTCAAGAACACATGAGAAGGATAGGAAGATTGAATCATCCTAACTTGCTTCCTCCTGTGGCTTACTATTATAGAAAGGAAGAGAAGCTCTTGGTTACCGACTTTGTTCAAAATGGCAGCTTGGCTGTTCGCCTCCATGGACATCAAGCTCTGGGAGAACCAAGCCTTGATTGGCCAATCAGGTTGAAGATTGTGAAGGGCATAGCAAAAGGTCTTGAATATCTATACAAGGACATGCCTAGCCTAATTGCACCCCATGGAAATCTGAAGTCCTCTAATGTTCTTCTGACTAAAAATTTTGAGCCCCTTCTCACAGACTATGGATTAGTCCCTGTGATAAACCAGGAGCTGGTTCAAGACATCATGGTGATATACAAGTCTCCTGAATATTTGCAACATGGAAGAATTACAAAGAAGACTGACGTGTGGTGTCTTGGAATACTAATTCTGGAGATTCTAACTGGCAAGTTCCCAGCTAACTTTTTGCAACAAGGTAAAGGAAGTGAGGTGAGTTTGGCAACTTGGGTTCAATCAGTTGTGCCAGAAGAGTGGACTAATGCTGTGTTTGATCAAGAAATGGGAGCAACTACGAACAGTGAGGGAGAGATGACTAAACTTTTGAAGATTGCTTTGAGTTGTAGTGAAGGGGATGTGGAAAAAAGATGGGATCTGAAAGAGGCAGTAGAGAAAATTCAAGAGGTGAAGGAAAGGGATCAGGAAGAGAATTTTTATACTTCTTATGCTAGTGAAGCAGATATGAAGTCTTCAAATTGA 1878 0.4207 MALSGWPSWIIFILLLHVIASSGASDSELLLKVKDNLQITNHVLTSWNTSSSPCTHDHSHWRGVLCYQGRVWGLKLENMGLKGLIDVDSLKQLPSLRTLSFMNNDFDGTWPEVNKIVGLKSLYLSNNKFSGEIPPKTFEGMQWLKKIHLSNNQFSGAIPASLAILPRLMELRLEGNKFNGTIPELRQSKFKSFSVANNQLHGPIPVTVSKMPVSSFSGNSGLCGAPLEECPSNKPSTVSIVVAVVVVCVAVLVIAAVIFILHRRKQGATSSVECPPCGHKKGKSAEAGDDSRRSSRSVSSNHSRRGDHMKLSFIRDDREKFDLQELLRASAEILGSGCFSSSYKASLLNGPTIVVKRFKQMNNVGKEEFQEHMRRIGRLNHPNLLPPVAYYYRKEEKLLVTDFVQNGSLAVRLHGHQALGEPSLDWPIRLKIVKGIAKGLEYLYKDMPSLIAPHGNLKSSNVLLTKNFEPLLTDYGLVPVINQELVQDIMVIYKSPEYLQHGRITKKTDVWCLGILILEILTGKFPANFLQQGKGSEVSLATWVQSVVPEEWTNAVFDQEMGATTNSEGEMTKLLKIALSCSEGDVEKRWDLKEAVEKIQEVKERDQEENFYTSYASEADMKSSN* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1320 625 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Apr2g1320 625 Gene3D Ribonuclease Inhibitor 190 230 IPR032675 -
Apr2g1320 625 Gene3D Phosphorylase Kinase; domain 1 293 403 - -
Apr2g1320 625 SMART serkin_6 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1320 625 MobiDBLite consensus disorder prediction 605 625 - -
Apr2g1320 625 MobiDBLite consensus disorder prediction 279 306 - -
Apr2g1320 625 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Apr2g1320 625 Gene3D Ribonuclease Inhibitor 23 189 IPR032675 -
Apr2g1320 625 PANTHER LRR RECEPTOR-LIKE KINASE 10 614 - -
Apr2g1320 625 SUPERFAMILY L domain-like 24 227 - -
Apr2g1320 625 ProSiteProfiles Protein kinase domain profile. 328 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1320 625 SUPERFAMILY Protein kinase-like (PK-like) 332 601 IPR011009 -
Apr2g1320 625 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 614 - -
Apr2g1320 625 Pfam Protein tyrosine and serine/threonine kinase 332 598 IPR001245 GO:0004672|GO:0006468
Apr2g1320 625 Gene3D Transferase(Phosphotransferase) domain 1 404 622 - -
Apr2g1320 625 MobiDBLite consensus disorder prediction 269 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1320 Apr-Chr2 19385214 19388306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1320 10 624 Receptor kinase-like Gene Family AT5G35390 54.743 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Apr2g1320 PK_Tyr_Ser-Thr 4.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1320 - - gmx:100804368 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1320 2 19385214 19388306 Apr2g1320 2 19385214 19388306 ECH
Apr2g1320 2 19385214 19388306 Apr6g1238 6 16834364 16836421 PCT