Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1317 ATGGGGATTTGCTTCAGCATTGAAGAACAAAAGCATCTCACCGTCTCGGATTCAAACGCAAAGCCTAAACCTGCAGGATCATTAGGTCATGAATCTGTCTCATCCACGGCTCCATTAGTCTCCAGTTCCATGAATATCGTAGATCTCCGTCAAAGCGCTGGATACAGCAATGTTGATATTTTCACGTACGAGGAGTTGAGGCTCGCAACCAAACACTTTCGTCCTGATTTCATTTTGGGAGAAGGTGGCTTTGGCGTTGTATATAAAGGAGTTATAGATGATAGTGTGAGGTTGGGTTACAAGTCCACTGAAGTCGCCATTAAGGAGCTTAATCGCGAAGGATTTCAAGGCGATAGGGAATGGCTCGCGGAAGTTAACTATTTAGGTCAATTCAGTCATCCAAATCTTGTCAAGCTCATTGGATATTGCTGTGAGGATGAACACAGGTTATTGGTGTATGAGTACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACCTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAAAGGGCTTGCTTTTCTTCATGGTGCTGAAAGGCCTATCATATATCGTGACTTCAAGACTTCTAATATCTTGCTAGATGCGGATTTCAATGCAAAGCTTTCAGACTTTGGCCTAGCAAAGGATGGGCCAATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCAGCACCTGAGTATGTCATGACTGGGCATTTGACAGCTCGAAGTGACGTGTATGGTTTTGGGGTGGTGCTACTTGAAATGCTTATTGGTAGGAGAGCATTAGACAAGAGCAGGCCCAGCCGAGAGCACAACTTGGTTGAGTGGGCCCGCCCGCTGTTGAATCATAATAAAAAACTTTTGAAAATTTTAGATCCAAAACTAGAAGGGCAATATTCAAGTAAAACTGCATTAAAAGTGGCTCATTTAGCATACCAATGTCTTAGCCAAAACCCGAAAGGCAGACCTCTGATGAGCCAGGTTGTTGAAATTCTTGAAAACTTCCAGTCAAAAGGGGAAAATGAGGAAGATCAAATACTTCAAAGTGGTGGTAGCAGTATAACCATTTATGAGGTTCCGAAGGGCAGCAATGACCCTCCAACATAG 1161 0.4367 MGICFSIEEQKHLTVSDSNAKPKPAGSLGHESVSSTAPLVSSSMNIVDLRQSAGYSNVDIFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDDSVRLGYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAAKGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYSSKTALKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSKGENEEDQILQSGGSSITIYEVPKGSNDPPT* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1317 386 ProSitePatterns Protein kinases ATP-binding region signature. 79 108 IPR017441 GO:0005524
Apr2g1317 386 CDD STKc_IRAK 79 353 - -
Apr2g1317 386 Gene3D Transferase(Phosphotransferase) domain 1 156 373 - -
Apr2g1317 386 ProSiteProfiles Protein kinase domain profile. 73 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1317 386 SUPERFAMILY Protein kinase-like (PK-like) 55 351 IPR011009 -
Apr2g1317 386 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 35 381 - -
Apr2g1317 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Apr2g1317 386 Gene3D Phosphorylase Kinase; domain 1 48 155 - -
Apr2g1317 386 Pfam Protein tyrosine and serine/threonine kinase 79 350 IPR001245 GO:0004672|GO:0006468
Apr2g1317 386 PANTHER OS01G0588500 PROTEIN-RELATED 35 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1317 Apr-Chr2 19360416 19364746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1317 61 350 Glycoside Hydrolase AT3G07070 51.877 1.06e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr2g1317 PK_Tyr_Ser-Thr 7.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1317 - - gmx:100800465 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1317 2 19360416 19364746 Apr2g1317 2 19360416 19364746 ECH