Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1295 ATGGGTGTTCCACAAACACCAACCCCTTCTCCACATCTATATCCACAAGAACTTCAGCTTAAACTTTACCAGGCTTTCATATTCTCAATTCCCATACTCTTTTCCATTATTTTGGTTCTCTTGTTTTACTTGTTCTACCTCAAAAGAAGGGCTTCCTCTCTCTCATCATCACCTCCTCTTCACATACTTCACTCTAATCCTAATCCGCAAGCTACGTATACCTACCCTTCATCACCTTGCCGTTTGAATCTGACTCTGCAATTTCTAGACAAACTTCCAAGAGTTTTATTTGATGAGGATTTGAGAACAAGAGATTCGGTATGTTGTGTTTGCCTTGGAGAATTTGAGCTGAAGGAAGAGGTGCTACAGATTCCTGATTGCAAGCATGTGTTTCATGTAAGCTGCATACGTAACTGGCTGCAATCAAACTCCACGTGTCCACTTTGTAGATGTTCTATCATTCCCTCTACCAAGTTCCTTAATCAAACACCACCTATTGCTTCAGACCCACCCCAACAAGTTGCTATTTCAGCCTCTCCATCACATATCATATCATTGCCTCCTCAACAAGAAGATGAAGCTAGTGCTTCCACAAACAGTACCATTTACCAAGGGAATTGTGATGTATTAGTTAGATAA 639 0.4085 MGVPQTPTPSPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSSPPLHILHSNPNPQATYTYPSSPCRLNLTLQFLDKLPRVLFDEDLRTRDSVCCVCLGEFELKEEVLQIPDCKHVFHVSCIRNWLQSNSTCPLCRCSIIPSTKFLNQTPPIASDPPQQVAISASPSHIISLPPQQEDEASASTNSTIYQGNCDVLVR* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1295 212 Pfam Ring finger domain 108 150 IPR001841 -
Apr2g1295 212 SUPERFAMILY RING/U-box 86 158 - -
Apr2g1295 212 SMART ring_2 108 149 IPR001841 -
Apr2g1295 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 155 IPR013083 -
Apr2g1295 212 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Apr2g1295 212 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 166 - -
Apr2g1295 212 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 3 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1295 Apr-Chr2 19163005 19164735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1295 3 208 C3H Transcription Factor Family AT4G10150 34.135 3.79e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1295 K19039 - gmx:100806499 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1295 2 19163005 19164735 Apr2g1295 2 19163005 19164735 ECH