Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1286 ATGGAAGCGGATTTCATGATGAATGATATGCTCACACTCACCCACGGTGCTTTCGATGCCAACGATATTGATGATGTAGCTATTGAAGGAGAAAGGTGTGGAATATGTATGGACATTGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCCACCATCACTAATCTCTGTCCACTCTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAGCAATAAAGTTGAAGATGACGTGTTCTTCAGAGATGATGAGTGGTCCATTGAAGCAAAGAATAACACGCTTTCATTTCCCTCGTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAGTTCGGAATGGATTGGCAACTATTGAAGGGGATTCTGGTCTTGATACATCAATTGCTTGTGATTCATGTGATACATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCAGAAAGTACATGGTTATGCCCAAGATGTGTTGCTGATGAAATTTCTAAAGGATCATCCAATTCAATAGAGAGGACAACTGTGGAATGTAACCCAGATAATAGTAACAGTGAGTGTCAAGATGAGGATTCCTTTTCAGGAAAAGTGTCTGTGTCTGTTGCTGATACAGGAGAGACAGCTGTTGTTGTCTCAATGGTTGACAGAAATAAATGGGTTCCAGCAACAAGCGAGAAAAGCCTATTGCCTTTTGAAGTTTGTGGTGATCCAACAACTGAATCATGTATGTTAATGTCTGACACAAATAATCAGCAGAGGGGGGAAGAGAAGACAAATGCGTCACCAATCGTGGAGGAAGAACTGGAATTGTCTTTATCAAACAATATATCCTGTAGCCTAACTTCTAAATCCTTGGGACATAATGATTTAAAGCAAAGTGCCAATGGGGCTAGGAATGAACTGAGTAGCTTTGATGGAGCCAAGTTATTTGATGAGTCCCATATCAAAACTAGTCCATCCAGAATTGAATCTGATATGGGTCTTCATCTTGGTTTGTCAGTGGGCTCCTTTTTATCTGTGGATAATGCAGACAAAAATGAAACAAAAGATCAAGCAACTGATGTCCTGAATGTGAGTCCAGAAGAATGTTTGTCAAAAGGAGATGAAATTGAAGCCAATGCTTGTAAGGACAATGCCAAAGTAACTGGTGGAAAGAGAAAGCATGTTGATTGCAGTGAACTAGTTCATATAAAAGCTGATGATGGAGATGACAAGCCTGAACTTCCAGATGAAGTTGTGCAAAAGAAAATTAAAGTTGCTGATAGTCAAATGAGTGATGCTAATGGCTCAGCTGATGCTCATCTTTTCAACAATTCGCAGAAAAACCCGGCTTTGAAACATTCTCTGACAAAGGAGATTGCCACATCAGATATAATGAATATAGTTAAAGGGACGAACCGGAGGCTTTCCAAGCGACTTACTGGGAGTAATACTTGTGACAAGTTATCTGAAAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAGTTTCTGATGATGGAGAATCATCATTGGTAGTTCAAAATCTAAAGAAGGAAATTAGAGAAGCTGTTCGTAACAAATCCTCTATAAACTTTGAGGAAAACCATTTTGATACAAAGCTTCTTGAAGCATTTAGGGCAGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAGTTATCCCCTGCAGCTATAAAGGCAAAGAAATCAATGTTGCAGAAAGGAAAAGTGCGTGAGCATCTAACAAAGAAAATATTTGGGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAATTTTGGAAATATCGTTGCATGAGAGCAACAAAGCCTGAAAAGATTGAAACTTTGAAATCAGTTCTTGACCTACTAAGAAAAAGTTCTGGCAGTCCAGAATCCAAGCAAGCTGCTGAATGTCAGGCCAAGAATCCTATTCTTTCTCGGCTGTATTTAGCAGACACATCTGTTTTCCCACGGAAAGAGGATGTAAAACCTCTGTCTGTACTTAAAACCGTTGCTAACTCAGAGCAAGTTAAACAAAACAACCCATCAGAAAAAGTACCAAATCTATCTGTTGATAACAATGCTATCAAATCAACAGATGTAAATAATCTTTTATCAAAGACAAGAGTTTGTTTATCTGAAAAAAAGGTAGATAAGAAAATTGTACATGGTCCAGTTGGTGATAGTTCAGCTTCTGGCAAAGTGCGCTTAAGCAATCACTCAGAAAGAACATTAGTTTCTTCTGCTAGTGTCAAGGTTGGCACAAAGGAGTTAGGCCTTAAATCTGATTCTATGAAGAGTGATAAAAGAAAATGGGCCTTGGAGGTTCTTGCGAGGAAAACAGCTGTGACAAGCACGAACACATCTAGTGGAAATCAAGAAGACAATGCAATATTTAAAGGAAATTATCCTTTGCTTGCTCAATTGCCAATTGACATGAGACCAACATTGGCTCCTTGTCGCCACAATAAAATTCCTATAGCAGTGAGGCAGACACAGCTCTACCGCCTGACAGAGCGCTTATTGAGGAACACAAATCTGGCAGTCATTCGCAGAACTGTAGATACAGAATTAGCTGTTGCAGATGCAGTTAATATTGAAAAAGAGGTTGCTGACAGATCAAACAGCAAGATTGTGTATCTGAACCTTTGTTCACAAGAGCTCTCGCATCGCACAAATAACACAAAATCCAATGTAGCCGCAGATACAAGTCCACCAGCCTCATCAGCTGTGCTTACTGATCAATCAGAATTAAATACCAATGATCTTTCGACTGACCCTGCTGTTGAAACAGCCTTGAAAAATGCTGGTCTGCTGTCTGATTCCCCACCTAGCAGTCCTCGTGAAAACACAGAATTATGTGATGCAGATGATACGTCGGGACCCGATAATATATTTGAGCTGGATTCTCATCCTGAGCTGGATATTTATGGCGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCTAGTATTACCAATGTATCAAACCCAAAACAAGAGGAAAATGAGTCAAAAGTAAAACTTATTTTCTCCACCGTGAACTTGAAAAAGTCAGATGTCACTTTGGATCGTGCAGACTGTGAGGGGTCTGAAAGAAACGAAGTGCCAGGAGATACCTCCTGTCCACCAAACTGTCACAATGATGCATTGCATCAGGATTCTACAAATGATGCAGAGATGGGCCAGCCTTCTGTTTCTTCCGAGCTTCTACCCTGCGAGGGTGCTGCTGAGCCAGTTGATTCCGAATTTGAAGAATTATATGGACCTGACAAAGAACCGCTTATAAAAAAATTTCCCGTCGGTGAAACAATATCATTACATGGAGATGGCAAGACAGAATCTCTAAGCGAGGCCAATGACTACCATAATGATGAAAAACATGTCTCGGGCCAAGCAGTAAATGCTTCGGAACAAGGGAATGAGAGTCTCACAGAAAAAGTTTCTCTTACTTCCATCACCGACAAATCTTCAGATATATCTGAGGCTGGTGAAAATTTCCAAGCGAAGGAAGAGAAATCTGATGTCACTGCTAAGCAGAGTGACTCTGTAAATCATGTAATTAAGAAGGTAGAAGCTTACATCAAGGAACATATAAGGCCACTGTGCAAGAGTGGGGTAATCACGGCTGAACAATATAGGTGGGCTGTGGCAAAAACAACTGATAAGGTTATGAAGTATCATTCTAAAGCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAATAAAGAAACTTGCAGAGCAGTATGCTGAAGCATCCCAACAAAATAGAAAAAATTGA 3873 0.4002 MEADFMMNDMLTLTHGAFDANDIDDVAIEGERCGICMDIVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDDVFFRDDEWSIEAKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATIEGDSGLDTSIACDSCDTWYHAFCVGFDTEGTSESTWLCPRCVADEISKGSSNSIERTTVECNPDNSNSECQDEDSFSGKVSVSVADTGETAVVVSMVDRNKWVPATSEKSLLPFEVCGDPTTESCMLMSDTNNQQRGEEKTNASPIVEEELELSLSNNISCSLTSKSLGHNDLKQSANGARNELSSFDGAKLFDESHIKTSPSRIESDMGLHLGLSVGSFLSVDNADKNETKDQATDVLNVSPEECLSKGDEIEANACKDNAKVTGGKRKHVDCSELVHIKADDGDDKPELPDEVVQKKIKVADSQMSDANGSADAHLFNNSQKNPALKHSLTKEIATSDIMNIVKGTNRRLSKRLTGSNTCDKLSEKGNMAGLRVKKIMKRVSDDGESSLVVQNLKKEIREAVRNKSSINFEENHFDTKLLEAFRAAITGPKTELVNKLSPAAIKAKKSMLQKGKVREHLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKSSGSPESKQAAECQAKNPILSRLYLADTSVFPRKEDVKPLSVLKTVANSEQVKQNNPSEKVPNLSVDNNAIKSTDVNNLLSKTRVCLSEKKVDKKIVHGPVGDSSASGKVRLSNHSERTLVSSASVKVGTKELGLKSDSMKSDKRKWALEVLARKTAVTSTNTSSGNQEDNAIFKGNYPLLAQLPIDMRPTLAPCRHNKIPIAVRQTQLYRLTERLLRNTNLAVIRRTVDTELAVADAVNIEKEVADRSNSKIVYLNLCSQELSHRTNNTKSNVAADTSPPASSAVLTDQSELNTNDLSTDPAVETALKNAGLLSDSPPSSPRENTELCDADDTSGPDNIFELDSHPELDIYGDFEYDLEDEDYIGASITNVSNPKQEENESKVKLIFSTVNLKKSDVTLDRADCEGSERNEVPGDTSCPPNCHNDALHQDSTNDAEMGQPSVSSELLPCEGAAEPVDSEFEELYGPDKEPLIKKFPVGETISLHGDGKTESLSEANDYHNDEKHVSGQAVNASEQGNESLTEKVSLTSITDKSSDISEAGENFQAKEEKSDVTAKQSDSVNHVIKKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTDKVMKYHSKAKNANFLIKEGEKIKKLAEQYAEASQQNRKN* 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1286 1290 Coils Coil 1266 1290 - -
Apr2g1286 1290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 110 IPR013083 -
Apr2g1286 1290 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Apr2g1286 1290 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Apr2g1286 1290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 188 IPR013083 -
Apr2g1286 1290 SUPERFAMILY RING/U-box 26 78 - -
Apr2g1286 1290 MobiDBLite consensus disorder prediction 1057 1097 - -
Apr2g1286 1290 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Apr2g1286 1290 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Apr2g1286 1290 PANTHER RING/U-BOX PROTEIN 103 1287 - -
Apr2g1286 1290 SMART ring_2 123 182 IPR001841 -
Apr2g1286 1290 SMART ring_2 33 71 IPR001841 -
Apr2g1286 1290 SMART PHD_3 131 183 IPR001965 -
Apr2g1286 1290 SUPERFAMILY FYVE/PHD zinc finger 145 187 IPR011011 -
Apr2g1286 1290 MobiDBLite consensus disorder prediction 963 989 - -
Apr2g1286 1290 MobiDBLite consensus disorder prediction 1160 1193 - -
Apr2g1286 1290 Coils Coil 534 554 - -
Apr2g1286 1290 MobiDBLite consensus disorder prediction 1160 1203 - -
Apr2g1286 1290 PANTHER RING FINGER PROTEIN 41, 151 103 1287 - -
Apr2g1286 1290 MobiDBLite consensus disorder prediction 1075 1093 - -
Apr2g1286 1290 Pfam PHD-finger 148 183 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1286 Apr-Chr2 19097688 19108460 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1286 33 125 C3H Transcription Factor Family AT3G58030 30.693 2.57e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr2g1286 PHD 1.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1286 - - gmx:100808102 2099.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1286 2 19097688 19108460 Apr2g1286 2 19097688 19108460 ECH