Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1277 ATGGCTCCCTCGACCATATTATATGTATTTTGTATCTTGCTTTTTCATCTTCAAATCACCAGAGGGAAACAAGTTAATTGCAATAGCTTATCATGCGGTGATATTGATATTCAATTTCCTTTCGGTTTGAAAGGATCCAATCAAGATCGTAGCTGCAGCTATTACCCAGCTCCCACTTTCCATCTCTCTTGCATCAACCGCACCCAAACAATTTTGACGCTCCCATATTTCGGAGACTTGCTCGTGAAAAGCATCGATTACGAATCCCAAAGCATCCGAGTCAACGACCCAAACGGTTGCCTCCCGAAACGGTTCTTACATAAATGGAACCTCTCCGGTTCGCCTTTCAAGTTAAACCCCGCCCTTTACGGAACAACACCGTACAACCTCACTTTCCGACGTTGTCCATCCAATGTAACAGACTCGCCTCAATTGCCGTTAGTGCCGATTTCGTGCCTCAGCAACTCCAACAACTCTTCCGTCATAGTTTCGTGGTCGCAGCCTATTGTGTCGTCACCCATGGTGTCTCAATGGTGCGAGGTTATTTCATGGGCTTATGTCCCCCTCCCAACGTTGGACATACCGATGTGGCCCTTCTGGCCCGATCTCAACGACGATCTTCAGTTGGTGTGGGCCCAACCCAGGTGTAAGGAGTGCGCACTTAGTGGCCAACTTTGTGGGTTCTCTAAGGATAACAGTCTTCAAGTTGCGTGCTACCCTAGTTCTCGTTCCTCTAGCAAAGGTCTATCAAGAAGTGCCAAATATGGCCTAGCTATTGGAGTGGGAATACCTGGACTCTTGTGTATAATTGGGTTTTCTTGTTTTTTATGTGGTAAGTTCAGGATGATGACCCATCGTGGACCTAGCACAGAGCTTCCAGCCACAATTTCCTTAGAACCTATCCCTTTTGTAATGGGACTTGATGGTGCTACTATTGAAAAGTATCCCAAAACTCTTCTTGGGGAGAGTGGGCGCTTATTGAAGCCCAATGACAATACCTGTGCAATTTGCCTCTCTGAATATGAACCCAAAGAGACCTTGAGGAGCATACCCGAGTGCAACCATTATTTTCATGCTCAGTGCATAGATGAGTGGCTCAAAATGAATGGCACGTGCCCAATATGCAGGAATTCACCCGAAGCATCTTCCACCATCTCTTTTTCTTCCTTATCTCCCACTTCTTCATTGTCCTCTTCATAA 1200 0.4608 MAPSTILYVFCILLFHLQITRGKQVNCNSLSCGDIDIQFPFGLKGSNQDRSCSYYPAPTFHLSCINRTQTILTLPYFGDLLVKSIDYESQSIRVNDPNGCLPKRFLHKWNLSGSPFKLNPALYGTTPYNLTFRRCPSNVTDSPQLPLVPISCLSNSNNSSVIVSWSQPIVSSPMVSQWCEVISWAYVPLPTLDIPMWPFWPDLNDDLQLVWAQPRCKECALSGQLCGFSKDNSLQVACYPSSRSSSKGLSRSAKYGLAIGVGIPGLLCIIGFSCFLCGKFRMMTHRGPSTELPATISLEPIPFVMGLDGATIEKYPKTLLGESGRLLKPNDNTCAICLSEYEPKETLRSIPECNHYFHAQCIDEWLKMNGTCPICRNSPEASSTISFSSLSPTSSLSSS* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1277 399 Pfam Wall-associated receptor kinase galacturonan-binding 27 96 IPR025287 GO:0030247
Apr2g1277 399 SMART ring_2 334 375 IPR001841 -
Apr2g1277 399 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 399 - -
Apr2g1277 399 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 399 - -
Apr2g1277 399 CDD RING-H2_PA-TM-RING 333 376 - -
Apr2g1277 399 Pfam Ring finger domain 332 376 IPR001841 -
Apr2g1277 399 SUPERFAMILY RING/U-box 327 378 - -
Apr2g1277 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 381 IPR013083 -
Apr2g1277 399 ProSiteProfiles Zinc finger RING-type profile. 334 376 IPR001841 -
Apr2g1277 399 MobiDBLite consensus disorder prediction 380 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1277 Apr-Chr2 19026091 19028696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1277 26 379 C3H Transcription Factor Family AT2G46495 37.673 2.90e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1277 - - gmx:100810240 582.793