Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1276 ATGGCCACCTTGCCAATTTTGATTCCCTTGTTCCTCCTGCTTCTGGTAACAGCAAGCGCTGACTTAACATGTAAAAGCACGTCTTGCGAAAGCGGTGGGATCTCGATTGAATTCCCGTTTTGGTTGGAAGAAACGAGGCAAAGCCTTGGATGCGGCTACCCAGGGTTCCAACTCTGGTGCAGCAAAGACACTAATCTCAGCCTCAGAAAACCCTTCATCACTCTACCTCAATCCGGAGACTTCGTAGTCAAACTCATTTCCTTAGAGGAACAAAAGATTTGGATTAACGACCCTCATCAGTGTCTCCCTAACCGCATCTTGCGTGACCGTGGCTTCAATCTCCAAGGTTCCCCATTCCGATTAAGCGATTATTATACTTACGTTGATTTTAAGTTCCTAAATTGCCCCTCCAATTTAACCTCCTCCGATTTAGGACAACCTATTAGTTGTTTAACTTCTAACGACACCAACCTCGTCAACTATTCGGTGGTGGCTGTCTTGTCCGATCCTCCGTTCTCTACGCCGTGGACATCATCGTGCCAGCTTATTTCCACGGCTTCCATCCCTGTTGCGGTTCCCAACACGCCTTGGTTGTTTTGGACCGATTATTATTCCGACATCCAATTGCAGTGGGACATCCCTAATTGTGGAAGTTGTGAAGCACGTGGAGGACGATGTCGCTTACTTGGGGACTCTGATTTTAGCGTTGCTTGTTATGATCTTCCTAGCCAAGGTCAAGGTCTTTCAAGGAAAGCCAAGTACAGGATAAGCATTGGCCTGGGAATACCTGGACTCCTAGGGATCATTGGTCTTACATGCATTTTGTGCTGCAAGGGGAACTCGCGTGATCAAATCCAACGGCGGTTAAGCAGCACTGAATTTTCTACACTAGTTTTGCCTCGTCCACCTGTTGTTGTCATGGGCCTTGATGGGCCAGCTATAGAAAGGTACCCTAAGACCCAACTTGGTGAAAGTGGACGGTTGCCCAAGCCCAATGACAATGTATGCTCCATATGCCTTTCTGAGTATCAGCCCAAGGAAATGTTAAGGACCATCCCAGAGTGCAATCACTATTTTCATTCCAATTGCATTGATGGATGGCTCAAAATGAATGCTTCCTGCCCATTGTGTCGAAATTTGCCCCATAGATCCCCTTCTCTTTCTACGTCTCTGCCTCCATACTCAACTTCTTAA 1194 0.469 MATLPILIPLFLLLLVTASADLTCKSTSCESGGISIEFPFWLEETRQSLGCGYPGFQLWCSKDTNLSLRKPFITLPQSGDFVVKLISLEEQKIWINDPHQCLPNRILRDRGFNLQGSPFRLSDYYTYVDFKFLNCPSNLTSSDLGQPISCLTSNDTNLVNYSVVAVLSDPPFSTPWTSSCQLISTASIPVAVPNTPWLFWTDYYSDIQLQWDIPNCGSCEARGGRCRLLGDSDFSVACYDLPSQGQGLSRKAKYRISIGLGIPGLLGIIGLTCILCCKGNSRDQIQRRLSSTEFSTLVLPRPPVVVMGLDGPAIERYPKTQLGESGRLPKPNDNVCSICLSEYQPKEMLRTIPECNHYFHSNCIDGWLKMNASCPLCRNLPHRSPSLSTSLPPYSTS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1276 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 382 IPR013083 -
Apr2g1276 397 Pfam Wall-associated receptor kinase galacturonan-binding 24 97 IPR025287 GO:0030247
Apr2g1276 397 CDD RING-H2_PA-TM-RING 335 378 - -
Apr2g1276 397 SMART ring_2 336 377 IPR001841 -
Apr2g1276 397 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 391 - -
Apr2g1276 397 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 2 391 - -
Apr2g1276 397 Pfam Ring finger domain 335 378 IPR001841 -
Apr2g1276 397 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
Apr2g1276 397 SUPERFAMILY RING/U-box 331 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1276 Apr-Chr2 19021604 19023768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1276 18 381 C3H Transcription Factor Family AT2G46495 35.054 2.72e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1276 - - lja:Lj4g3v3004070.1 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1276 2 19021604 19023768 Apr2g1276 2 19021604 19023768 ECH