Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1262 ATGGCTGACACGGTTGCTGAAGTACCTACGAAGAGGTCAAGGGGCAGAAGAGTCCTGAAGGAGAAAAAAACCCCATCAACAAACGAGGCCAACATCTTAGCTGGGAAGGTTTCTGAGTCCTCTACAACACCAATTTCACCACCTGATAAGGCTCGTGTTGCCTCAAAGAAACAACAATCTTTCGAGAAAGAGTTGCTAGAGATGCAGGAAAAGCTGCAGCAATTGCGCCTTGAGAAGGAGAAGACTGAAGAGCTTTTAAAGGCCAAAGATGAGGCTCTCAAGCTGAAGGAGGAAGAGCTCGAAAGCCGTGAGCGGGCGCAAGAGAAGCTTCACATTGAGCTGAAAAAGTTGCAGAAGTTGAAGGAGTTTAAGCCTACCATGAATTTGCCTGTGTTGAAAGATAATGAACCTAAAAAGAAGGATAAGAAAAAGAATGGGTGCTCTGAGAAAAAAAGGCCTTCTCCACCTTACATTTTATGGTGCAAAGACCAATGGAATGAGATTAAGAAGGGGAACTCAGAGGCAGAATTTAAGGACATATCAAACATGCTGGGGGCTAAATGGAAGTCAATTAGTGAAGAAGAGAAGAAGCCTTATGAGGAGAAATACCATGCTGAAAAAGAAGCTTATTTGCAAGTAATTGCGAAGGAAAAACGTGAGAGTGAAGCAATGAAGCTGTTGGAAGAAGAGCAGAAGCAAAAGACTGCCATGGAATTGCTTGAACAGTATATGCAATTCAAACAAGAGGCAGAAAAAGAGACCAAGAAAAACAAGAAGGAGAAGGATCCATTGAAACCAAAGCACCCCGTTTCAGCTTATTTCTTGTTTACTAATGATAGGCGAGCAGCTCTTCTAGCTGAGAACAAGAATTTCTTGGAGGTTCCTAAGATCACAGCTGAAGAATGGAAAAACATGACAGAACAACAAAGGAGGCCTTATGAAGAGATGGCAAAGAAAAACAAGGAGAAGTATAACCAAGATATGGAGGCTTATAAACAGAAAAAAGATGAGGAGGCTACTCAACTCATGAAAGAAGAGGAGGAGAATATGAAACTTCAGAAACAGGAAGCATTGCAACTGCTGAAGAAGAAGGAGAAAACTGAAAATATGATCAAGAAAACAAAAAAGAATCAACAAAAGAAGAAACAAACCAAGGAAGATAAGAATGTTGATCCAAACAGGCCTAGGAGGCCTCCATCCTCATTCATCCTATTCAGCAAAGAAGCAAGGAGAAATTTACAAGAGGAACGAACAGGAATCACCACATCAACCCTTAATGCACTTGTTTCTTTGAAGTGGAAGGAACTGAGCGAGGAAGATAGACAATTGTGGAATGGAAAAGCATCTGAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAACAAATCCATAGCTGCAGACCAGGAGCAGGACCATAATGCCAAAGAATAG 1440 0.4146 MADTVAEVPTKRSRGRRVLKEKKTPSTNEANILAGKVSESSTTPISPPDKARVASKKQQSFEKELLEMQEKLQQLRLEKEKTEELLKAKDEALKLKEEELESRERAQEKLHIELKKLQKLKEFKPTMNLPVLKDNEPKKKDKKKNGCSEKKRPSPPYILWCKDQWNEIKKGNSEAEFKDISNMLGAKWKSISEEEKKPYEEKYHAEKEAYLQVIAKEKRESEAMKLLEEEQKQKTAMELLEQYMQFKQEAEKETKKNKKEKDPLKPKHPVSAYFLFTNDRRAALLAENKNFLEVPKITAEEWKNMTEQQRRPYEEMAKKNKEKYNQDMEAYKQKKDEEATQLMKEEEENMKLQKQEALQLLKKKEKTENMIKKTKKNQQKKKQTKEDKNVDPNRPRRPPSSFILFSKEARRNLQEERTGITTSTLNALVSLKWKELSEEDRQLWNGKASEAMDAYKKELEEYNNKSIAADQEQDHNAKE* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1262 479 MobiDBLite consensus disorder prediction 359 403 - -
Apr2g1262 479 Gene3D High mobility group box domain 375 477 IPR036910 -
Apr2g1262 479 Gene3D High mobility group box domain 249 344 IPR036910 -
Apr2g1262 479 SUPERFAMILY HMG-box 390 465 IPR036910 -
Apr2g1262 479 MobiDBLite consensus disorder prediction 246 267 - -
Apr2g1262 479 CDD HMGB-UBF_HMG-box 266 329 - -
Apr2g1262 479 SUPERFAMILY HMG-box 253 339 IPR036910 -
Apr2g1262 479 SUPERFAMILY HMG-box 137 213 IPR036910 -
Apr2g1262 479 Coils Coil 58 120 - -
Apr2g1262 479 SMART hmgende2 394 464 IPR009071 -
Apr2g1262 479 SMART hmgende2 265 333 IPR009071 -
Apr2g1262 479 SMART hmgende2 149 219 IPR009071 -
Apr2g1262 479 MobiDBLite consensus disorder prediction 359 394 - -
Apr2g1262 479 MobiDBLite consensus disorder prediction 303 325 - -
Apr2g1262 479 Coils Coil 229 256 - -
Apr2g1262 479 MobiDBLite consensus disorder prediction 9 24 - -
Apr2g1262 479 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 332 IPR009071 -
Apr2g1262 479 MobiDBLite consensus disorder prediction 133 150 - -
Apr2g1262 479 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 6 472 IPR044601 GO:0003677
Apr2g1262 479 Coils Coil 445 472 - -
Apr2g1262 479 Pfam HMG (high mobility group) box 151 212 IPR009071 -
Apr2g1262 479 Pfam HMG (high mobility group) box 266 332 IPR009071 -
Apr2g1262 479 Pfam HMG (high mobility group) box 395 463 IPR009071 -
Apr2g1262 479 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 150 218 IPR009071 -
Apr2g1262 479 MobiDBLite consensus disorder prediction 125 155 - -
Apr2g1262 479 MobiDBLite consensus disorder prediction 25 48 - -
Apr2g1262 479 CDD HMGB-UBF_HMG-box 151 215 - -
Apr2g1262 479 Coils Coil 314 384 - -
Apr2g1262 479 MobiDBLite consensus disorder prediction 1 58 - -
Apr2g1262 479 Gene3D High mobility group box domain 146 226 IPR036910 -
Apr2g1262 479 CDD HMG-box 395 460 - -
Apr2g1262 479 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 395 463 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Apr2g1262 HMG_box 3.9e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1262 K09273 - gmx:100783033 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1262 2 18869192 18871392 Apr2g1262 2 18869192 18871392 ECH