Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1257 ATGGCTAAGCACATTCACCGCCTTAACCGCACCAAACTACTCATCACACCCTCTTCACAAGAACATTACCCAATGAAGAACCATCCCTATCCTAAACTAGTACGCATACGTGTCACCGACGCTGACGCCACTGACTCCTCCAGCGACGAAGACCAACCCTCCGTGTCCTCCACGCGCCGCCGACTCAAAAACTTCGTCAACGAAATTATAATCGACTCCTGCGACAACCATGGCGCTGGTGTTGTTTCCCGGAGGAGAAGCAGGAACAAGTGTAACAAAGGCGTGTCTCCGGCGACTCGGCGGCAACCTGGAATATGCTCCGGGAAGAAATTCCGGGGAGTGAGACAGAGGCCGTGGGGGAAGTGGGCGGCGGAGATAAGAGACCCGTCCCGCCGCGTGCGGTTGTGGCTGGGAACTTACGATACCGCCGAAGAAGCCGCCATTGTGTATGACAACGCGGCCATTCAGCTTCGTGGCGCCGACGCGCTCACCAATTTCATAACGCCGCCGGCGGAGAATAAAAAGTCCGGTTACAATTCCGGCGAGGAATCTCGGAACAACGACTTGCATTCCCCCACTTCGGTTCTTCGGTGTCGTTCGTATTCGGAGGAAGTTGAGTCCGTTACTGCGAGAGACGATGTGGTTGATCCGGCTAGTGAGTGTGAATATTCGTGCGTTTCGGAAGATAAGTTGAAGTCGGAGTCAATATTTCCGATTCCGAGCGATTCAGTGTTTGACTTCGAGAGCACGTTGGATATGTTCGACGACGTCGTTAATGTGCCGGAAAGTATCTTCTTCGCTGACGATTTTGTGAGTTTGGATTTTGGGTTCGGAAATTGGCATAGCGAGTGTGATAATTTCCAAGATATTGGGGATTTGTTTGTTTCGGATCCCCTTTTAGCTCTTTGA 909 0.5204 MAKHIHRLNRTKLLITPSSQEHYPMKNHPYPKLVRIRVTDADATDSSSDEDQPSVSSTRRRLKNFVNEIIIDSCDNHGAGVVSRRRSRNKCNKGVSPATRRQPGICSGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAENKKSGYNSGEESRNNDLHSPTSVLRCRSYSEEVESVTARDDVVDPASECEYSCVSEDKLKSESIFPIPSDSVFDFESTLDMFDDVVNVPESIFFADDFVSLDFGFGNWHSECDNFQDIGDLFVSDPLLAL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1257 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 3 298 - -
Apr2g1257 302 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 298 - -
Apr2g1257 302 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Apr2g1257 302 SUPERFAMILY DNA-binding domain 110 166 IPR016177 GO:0003677
Apr2g1257 302 MobiDBLite consensus disorder prediction 169 192 - -
Apr2g1257 302 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Apr2g1257 302 CDD AP2 109 166 IPR001471 GO:0003700|GO:0006355
Apr2g1257 302 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Apr2g1257 302 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Apr2g1257 302 MobiDBLite consensus disorder prediction 79 110 - -
Apr2g1257 302 MobiDBLite consensus disorder prediction 168 192 - -
Apr2g1257 302 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Apr2g1257 302 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1257 Apr-Chr2 18827606 18828514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1257 25 302 AP2-EREBP Transcription Factor Family AT4G23750 42.073 6.20e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr2g1257 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1257 - - gmx:100813992 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1257 2 18827606 18828514 Apr2g1257 2 18827606 18828514 ECH
Apr7g0543 7 11862764 11864297 Apr2g1257 2 18827606 18828514 PCT