Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1248 ATGGGCAACTGCAGCAGCGGCGGTGCCGCCGCAACCACTTACTCCGAAAACCCTGCCCCCCACAACGGCCTCACAGTTCTCCCCCCAGACTCCAACCCTTCACCCCCACCACCCTCCTCTTTGGGCCGCGTGCTTGGCCGACCCATGGAGGACGTCCGGTCCATTTACATCTTCGGGCGCGAACTGGGCCGCGGCCAATTCGGTGTGACTTACTTAGTGACCCACAAAGTGACGAAGGAGCAGTTCGCTTGCAAATCAATCGCCACACGCAAGCTCATTAACAAAGATGACATCGACGACATTCGCCGTGAGGTTCAGATCATGCACCACCTCACCGGCCACCGCAATATTGTCGAGCTCAAGGGTGCTTACGAGGACCGCCACTCCGTCAACCTCATCATGGAACTCTGCGCCGGAGGGGAACTCTTCGACCGGATCATCGCCAAAGGCCACTACTCCGAGCGTGCCGCCGCCAACTCGTGCCGCCAGATTGTGACCGTTGTGCATAACTGTCACTCCATGGGAGTGATGCATAGGGACTTGAAGCCTGAGAACTTCTTGTTGCTCAGCAAGGACGATGATTCCCCCCTCAAGGCTACGGATTTTGGTCTCTCTGTGTTTTTCAAACCAGGTGACGTGTTTAAAGATCTCGTTGGGAGTGCTTACTATGTTGCTCCTGAGGTGCTGCGAAGGAGTTATGGGCCTGAAGCTGATATTTGGAGTGCCGGGGTTATATTGTACATTCTGCTTTCTGGTGTTCCACCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCGTATCGGATCCTTGGCCTTCCATATCAAGCAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGCTGACCCCAAAGAACGGCTTTCAGCACTTGAAGTACTTAATCATCCCTGGATGAGAGTAGATGGAGATGCATCTGATAAGCCTCTCGACATTGCTGTTTTAACCAGAATGAAACAATTCCGAGCAATGAACAAGCTGAAAAAAGTAGCTCTAAAGGTTATTGCTGAAAACCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGATACAGATAATAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCAAAACTGGGTAGTAAACTTTCTGAGTCTGAAGTAAGGCAATTGATGGAAGCGGCTGACGTAGATGGGAATGGAACGATTGATTATATTGAATTTATAACTGCTACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTTTATAAAGCCTTTGAATATTTTGACAAGGACAAGAGCGGGTACATCACAATGGAAGAGTTGGAAATAGCCCTTAAGAAGTATAACATGGGTGACGAGAAAACAATAAAGGAAATCATTGCTGAAGTTGATACTGATCATGATGGAAGAATTAACTATGACGAATTTGTAGCCATGATGAGGAAAGGCAACCCGGAAATAACCCACAGACGTCGCAAATAG 1521 0.4793 MGNCSSGGAAATTYSENPAPHNGLTVLPPDSNPSPPPPSSLGRVLGRPMEDVRSIYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINKDDIDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLSKDDDSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFVSDPWPSISSSAKDLVKKMLRADPKERLSALEVLNHPWMRVDGDASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDKDKSGYITMEELEIALKKYNMGDEKTIKEIIAEVDTDHDGRINYDEFVAMMRKGNPEITHRRRK* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1248 506 Pfam EF-hand domain pair 432 494 IPR002048 GO:0005509
Apr2g1248 506 Pfam EF-hand domain pair 362 422 IPR002048 GO:0005509
Apr2g1248 506 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Apr2g1248 506 Gene3D Phosphorylase Kinase; domain 1 58 141 - -
Apr2g1248 506 SMART efh_1 468 496 IPR002048 GO:0005509
Apr2g1248 506 SMART efh_1 397 425 IPR002048 GO:0005509
Apr2g1248 506 SMART efh_1 361 389 IPR002048 GO:0005509
Apr2g1248 506 SMART efh_1 433 461 IPR002048 GO:0005509
Apr2g1248 506 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
Apr2g1248 506 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 30 499 - -
Apr2g1248 506 ProSiteProfiles Protein kinase domain profile. 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1248 506 ProSiteProfiles EF-hand calcium-binding domain profile. 357 392 IPR002048 GO:0005509
Apr2g1248 506 ProSiteProfiles EF-hand calcium-binding domain profile. 429 463 IPR002048 GO:0005509
Apr2g1248 506 MobiDBLite consensus disorder prediction 1 20 - -
Apr2g1248 506 ProSiteProfiles EF-hand calcium-binding domain profile. 393 428 IPR002048 GO:0005509
Apr2g1248 506 MobiDBLite consensus disorder prediction 1 45 - -
Apr2g1248 506 CDD STKc_CAMK 56 313 - -
Apr2g1248 506 SUPERFAMILY Protein kinase-like (PK-like) 56 315 IPR011009 -
Apr2g1248 506 ProSitePatterns EF-hand calcium-binding domain. 406 418 IPR018247 -
Apr2g1248 506 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Apr2g1248 506 Gene3D Transferase(Phosphotransferase) domain 1 142 321 - -
Apr2g1248 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Apr2g1248 506 SUPERFAMILY EF-hand 353 494 IPR011992 -
Apr2g1248 506 Gene3D - 322 499 - -
Apr2g1248 506 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Apr2g1248 506 Pfam Protein kinase domain 58 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1248 506 PANTHER SERINE/THREONINE-PROTEIN KINASE 30 499 - -
Apr2g1248 506 SMART serkin_6 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1248 Apr-Chr2 18727759 18735924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1248 42 506 EF-hand Containing Proteins AT4G23650 81.290 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr2g1248 Pkinase 7.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1248 K13412 - gmx:100777096 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1248 2 18727759 18735924 Apr2g1248 2 18727759 18735924 ECH