Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1236 ATGGACTGGGATTTAGAAGCTATTGTGAGAGGAAGCACTAGTGAAGCCATCATCATGGACGAACCATATCCTAATTTTTCTAATTTCTTTGATGAACAAGATGAAGCACTTGGTAGTTTTCCCGAATTCTCTGAAACCACGAGGGTTCTTGATGATTTGGAAGAGCTTTACAAACCCTTCTACCCAGTTTTGCACCCTCTTTCACCGCACACCATCTTTACAAGTTCCATACCTATCCCCAAAGAACCCGAAGAAGCCAAAGAAGCATCAGAGAAAGTAGCTCCACAAGAGTTGCAAGTTCCCGCAGCATCTAAATCTAAAAAAAGCAAGAAGAACCAGAACAAGAGTGTGGTGAAGCAGGTGAGAACAGCAGAAGGTTTGGACGATGCATGGGCATGGCGTAAATATGGACAAAAACCAATAAAGGGTTCGCCTTATCCTCGAAGCTACTACAGATGCAGCAGTTCCAAAGGATGTTTGGCAAGAAAACAGGTTGAAAGAAGCCACTTAGATCCTGCTGTTTTTTTGGTTACATACACTGCTGAACACACACATCCTCACCCTACTCGTAGGAACTCTCTTGCTGGGACCACCCGCAAGAACAATTTCAATTCCAATTCCATAGTTGCACCTCCAACCACTCGTGACCAAAACACTTGTTCCTCAAATTCCTCAGTAGTAATTAGTAACTCTCCAAGGACACCTTTGGTGGTGCAATCCATTGTGACAGGTGTGCAACGAAGTAAGGGTTTGAAAAAAGAGGAAGACTTTCTTGAGTGGTTGGATGATATTGAAGGTGCTCAATTTGGTGATGGAAATTGGATTCCAAGCACAGATCTAGAGGAATTGGTAGGATTTGAGTACCAACAACTTGCACTAGATGGCTTTGGTGACACCTAG 900 0.4333 MDWDLEAIVRGSTSEAIIMDEPYPNFSNFFDEQDEALGSFPEFSETTRVLDDLEELYKPFYPVLHPLSPHTIFTSSIPIPKEPEEAKEASEKVAPQELQVPAASKSKKSKKNQNKSVVKQVRTAEGLDDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSHLDPAVFLVTYTAEHTHPHPTRRNSLAGTTRKNNFNSNSIVAPPTTRDQNTCSSNSSVVISNSPRTPLVVQSIVTGVQRSKGLKKEEDFLEWLDDIEGAQFGDGNWIPSTDLEELVGFEYQQLALDGFGDT* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1236 299 MobiDBLite consensus disorder prediction 185 227 - -
Apr2g1236 299 SUPERFAMILY WRKY DNA-binding domain 122 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr2g1236 299 Pfam WRKY DNA -binding domain 128 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr2g1236 299 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 2 230 - -
Apr2g1236 299 MobiDBLite consensus disorder prediction 83 120 - -
Apr2g1236 299 MobiDBLite consensus disorder prediction 190 227 - -
Apr2g1236 299 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 230 IPR044810 GO:0003700
Apr2g1236 299 Gene3D WRKY domain 111 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr2g1236 299 ProSiteProfiles WRKY domain profile. 122 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr2g1236 299 SMART WRKY_cls 127 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1236 Apr-Chr2 18598087 18599336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1236 4 199 WRKY Transcription Factor Family AT4G23550 54.369 6.30e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr2g1236 WRKY 9.2e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1236 2 18598087 18599336 Apr2g1236 2 18598087 18599336 ECH
Apr2g1236 2 18598087 18599336 Apr6g0635 6 9316442 9317982 ECH
Apr2g1236 2 18598087 18599336 Apr10g1292 10 25202946 25204662 ECH
Apr2g1236 2 18598087 18599336 Apr4g2277 4 31843455 31845442 ECH
Apr7g0566 7 12109359 12110557 Apr2g1236 2 18598087 18599336 PCT