Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1230 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCCCCTGAGGAAGATGAGAAACTCATCAGATACATTACTACTCATGGCTATGGTTGTTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGATGTGGCAAGAGTTGTCGCTTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGATTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGATGGGCACACATTGCAAGCCACTTGCCTGGTAGAACTGACAATGAAATAAAGAACTATTGGAACTCATGGATTAAAAAGAAAATAAGAAAGCCTTCGGTGTCTTCAACCACCAATATAGCACAAAGGATCGATCACAATTCCCAGTTCAATTATAATTCCAATATCCTAGATCACTTTGCCAACCAAGATAATCTAACAGCAAAGCCACCAGTTCAAGAAACCTCATTTTCTTCCACATGTCCTGTGTTCATGTTTGATACTAGTTCACTACTAGGGACAGCAACAGACGCCAATAGTACTGTAAGAGCTGAACACTTCCAAGAAGCTATGGGTTTTAGCTCTGAAACATGGAACTTGAACCACCATCAAGTTCAAGCACTTCCCCCTCTTACAGTCACTGTAGGCTTGGACACCACAAATTATTTGCCACCATTGATAGAAAACGTGGAAAACATGGTCCCAATTGAGGTACAATCTTGTAGTATGGATGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCAAGAGTTAAATGAATGGGTAGAAACGCAGCAACAATGTCCAAACTTTGTTTTCTGGGACAGTGTTGAAGGACAGCTTGGTGGGGAAGAACTAGCACCAAATTCATCAAATGTGGAAGCAAATACACTTTCACCTTTTCCTTCATCTTTCCCCCATCGCCTTCGCTTCCCCGTCGAAACCATGATCATTCCGGAGAAAAACCGTAAAGAGATCTGCAAATACCTCTTTCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATTTGGCGAAGCACCCGGAGATTGACGTGCCGAATCTGCAAGTGATTAAGCTCATGCAGAGCTTCAAGTCGAGGGAGTACGTGAGGGAAACCTTTGCTTGGATGCACTATTACTGGTTCCTCACCAACGACGGCATTGAGTTTCTGAGAACTTACCTTAATCTTCCTTCCGAAATTGTCCCTGCTACTTTGAAGAAACAAGCTAAGCCACCTGGCAGGCCTTTTGGTGGCCCACCCGGTGATCGCCCTAGGGGACCGCCGCGTTTTGAAGGGGAACGAAGATTCGGTGACCGTGATGGATACCGTGGAGGTCCTCGAGGACCGGGTGGTGATTTTGGAGGTGACAAGGGAGGAGCTCCTGCTGATTATAGGCCCTCTTTTGGGGGTCCTGGCGGAAGGCCTGGCTTTGGTCGGGGATCTGGTGGTTTTGGGGCGCCAACCAGCTCAAATATTCCCTAA 1509 0.4612 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVSSTTNIAQRIDHNSQFNYNSNILDHFANQDNLTAKPPVQETSFSSTCPVFMFDTSSLLGTATDANSTVRAEHFQEAMGFSSETWNLNHHQVQALPPLTVTVGLDTTNYLPPLIENVENMVPIEVQSCSMDEQGDIALECLQRQELNEWVETQQQCPNFVFWDSVEGQLGGEELAPNSSNVEANTLSPFPSSFPHRLRFPVETMIIPEKNRKEICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGGPGGRPGFGRGSGGFGAPTSSNIP* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1230 502 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr2g1230 502 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr2g1230 502 CDD SANT 69 112 IPR001005 -
Apr2g1230 502 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 246 501 - -
Apr2g1230 502 MobiDBLite consensus disorder prediction 414 502 - -
Apr2g1230 502 CDD SANT 17 61 IPR001005 -
Apr2g1230 502 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr2g1230 502 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr2g1230 502 Pfam Plectin/S10 domain 326 417 IPR005326 -
Apr2g1230 502 Gene3D - 68 140 - -
Apr2g1230 502 Gene3D - 6 66 - -
Apr2g1230 502 PANTHER 40S RIBOSOMAL PROTEIN S10 246 501 IPR037447 -
Apr2g1230 502 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Apr2g1230 502 MobiDBLite consensus disorder prediction 435 451 - -
Apr2g1230 502 Gene3D - 324 427 IPR036388 -
Apr2g1230 502 SMART sant 13 63 IPR001005 -
Apr2g1230 502 SMART sant 66 114 IPR001005 -
Apr2g1230 502 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr2g1230 502 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1230 Apr-Chr2 18521157 18533787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1230 1 297 MYB Transcription Factor Family AT1G63910 51.136 5.10e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g1230 S10_plectin 1.1e-42 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1230 K09422 K02947 gmx:100803556 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1230 2 18521157 18533787 Apr2g1230 2 18521157 18533787 ECH
Apr7g0572 7 12189955 12192205 Apr2g1230 2 18521157 18533787 PCT