Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1228 ATGAAAAGCAAAGCAAAAAGCAATTGTGACAGGGACGCTAAAATCAAAAGGGTTCTTATCCATGGTGGTAAATATGCACAGTACAATGTGTATGGAAACTTGTTCGAAGTGTCCTCCAAGTACGTGCCTCCTATTCGCCCAATTGGTAGAGGCGTTAATGGCATCGTTTGTGCTGCTGTTAATGCCGAAACACACGAACAAGTTGCCATCAAGAAGATTGGTAACGCATTTGACAATATAATTGATGCTAAGAGGACGTTGAGAGAAATCAAGCTCCTTCGTCACATGGACCACGAAAATATCATTGCCATCAAGGATATCATACGGCCCCCCAAAAAGGAGACCTTTAATGATGTATACATTGTTTATGAATTGATGGACACTGATCTTCATCATATAATTCATTCTGAACAACCTCTGAGTGAAGAACATTGTCAGTACTTCTTATATCAGCTGTTACGGGGGTTGAAATACGTGCACTCAGCTAATGTTTTGCACCGCGATCTTAAGCCTAGTAATTTACTAATGAATGCAAACTGTGACCTCAAAATCGGGGACTTTGGTTTGGCAAGGACAACCACTGAAACAGATTTCATGACAGAGTATGTTGTCACAAGATGGTACCGAGCCCCAGAATTGCTCCTTAATTGTTCTGAGTACACTTCTGCAATTGATGTTTGGTCTGTTGGTTGCATACTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGGAAAGACTATGTTCATCAACTAAGGCTTATAACCGAGTTATTAGGTTCACCTGACGATGCAAGCCTTGAATTTCTCCGAAGTGATAATGCTAGAAGATATATTAGACAGCTTCCACAGTACCGGAAGCAAAAATTCTCTGCTAGATTCCCTAACATGTTGCCTGAGGCATTGGATCTGCTAGAAAAGATGCTTATCTTTGATCCAAACAAACGCATTACAGTTGATGAGGCACTATGTCACCCATATCTTTCATCACTTCATAACATCAATGACGAGCCAGTGTGTCCCAGGCCATTCAGTGTTGATTTTGATCAGCCAACATGCACTGAAGAGCATGTGAAGGAGCTCATATGGAGGGAATCAGTGAAGTTCAATCCAGATCCACCCTGCCAGTAA 1131 0.4156 MKSKAKSNCDRDAKIKRVLIHGGKYAQYNVYGNLFEVSSKYVPPIRPIGRGVNGIVCAAVNAETHEQVAIKKIGNAFDNIIDAKRTLREIKLLRHMDHENIIAIKDIIRPPKKETFNDVYIVYELMDTDLHHIIHSEQPLSEEHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLMNANCDLKIGDFGLARTTTETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLEFLRSDNARRYIRQLPQYRKQKFSARFPNMLPEALDLLEKMLIFDPNKRITVDEALCHPYLSSLHNINDEPVCPRPFSVDFDQPTCTEEHVKELIWRESVKFNPDPPCQ* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1228 376 SUPERFAMILY Protein kinase-like (PK-like) 45 336 IPR011009 -
Apr2g1228 376 SMART serkin_6 42 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1228 376 Pfam Protein kinase domain 46 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1228 376 ProSiteProfiles Protein kinase domain profile. 42 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1228 376 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 375 - -
Apr2g1228 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Apr2g1228 376 ProSitePatterns Protein kinases ATP-binding region signature. 48 72 IPR017441 GO:0005524
Apr2g1228 376 Gene3D Transferase(Phosphotransferase) domain 1 126 355 - -
Apr2g1228 376 ProSitePatterns MAP kinase signature. 77 180 IPR003527 GO:0004707|GO:0005524|GO:0006468
Apr2g1228 376 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 375 - -
Apr2g1228 376 CDD STKc_TEY_MAPK 35 371 - -
Apr2g1228 376 Gene3D Phosphorylase Kinase; domain 1 25 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1228 Apr-Chr2 18501957 18506222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1228 16 371 MAP Kinase Gene Family AT4G01370 82.303 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Apr2g1228 Pkinase 4.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1228 - - gmx:100807109 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1228 2 18501957 18506222 Apr2g1228 2 18501957 18506222 ECH
Apr7g0574 7 12231992 12235204 Apr2g1228 2 18501957 18506222 PCT